View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20806_high_4 (Length: 283)
Name: NF20806_high_4
Description: NF20806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20806_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 40614403 - 40614583
Alignment:
| Q |
22 |
tattaaattagatttattatccctatttcggttgggtttgagggtaatttcttgttttagtagcaggttttataattttcctcttctacaaggcacacac |
121 |
Q |
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| T |
40614403 |
tattaaattagatttattatccctatttcggttgggtttgagggtaatttcttgttttagtagcaggttttataattttcctcttctacaagg--cacac |
40614500 |
T |
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| Q |
122 |
ccttttggccacatttannnnnnnctcaactctataattttccccttcgacaagtcacaggtgtttcgccacatttatttatt |
204 |
Q |
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| T |
40614501 |
ccttttggccacatttatttttttctcaactctataattttccccttcgacaagtcacaggtgtttcgccacatttatttatt |
40614583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 40610449 - 40610622
Alignment:
| Q |
28 |
attagatttattatccctatttcggttgggtttgagggtaatttcttgttttagtagcaggttttataattttcctcttctacaaggcacacaccctttt |
127 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||| ||||||||||| |||||||||||||||| |||||| |
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| T |
40610449 |
attagatttattatccctgtttcggttgggtttgagggtaattt-ttattttagtggcaggttgtataattttccccttctacaaggcacac--cctttt |
40610545 |
T |
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| Q |
128 |
ggccacatttannnnnnnctcaactctataattttccccttcgacaagtcacaggtgtttcgccacatttatttatt |
204 |
Q |
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| T |
40610546 |
ggccacgtttatttttttctcaactctctaattttccccttcgacaagtcacatgtgtttcgcgacatttatttatt |
40610622 |
T |
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