View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20807_high_1 (Length: 704)
Name: NF20807_high_1
Description: NF20807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20807_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 354
Target Start/End: Original strand, 8515996 - 8516333
Alignment:
| Q |
12 |
acagatataaactaagtttcattaactagatatgttactgaaataacaaaaacttaggctcattgttgttttgttttggaattgtggtttcagggacagt |
111 |
Q |
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| T |
8515996 |
acagatataaactaactttcattaactagatatgtttctgaaataacaaaaacttaggctcattgttgttttgttttttaattgtggtttcagggacagt |
8516095 |
T |
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| Q |
112 |
tacagcattctcagctgcaggggcaattggaattggagctggtatttggtacttgaagaaattgagagctactgcaccagtcacatgtggagttcaaacc |
211 |
Q |
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| T |
8516096 |
tacagcattctcagctgcaggggcaattggaattggagctggtatttggtacttgaagaaattgagagctactgcaccagtcacatgtggagttcaaacc |
8516195 |
T |
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| Q |
212 |
aatgataatagactattctaagaaaaaagatcgaatgcagtgnnnnnnnctatacaaatttacaaacatatatttcttttttgttattctcccgttagct |
311 |
Q |
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| T |
8516196 |
aatgataatagactattct---aaaaaagatcaaatgatgcgataaaaactatacaaatttacaaacatata--tcttttttgttactccccccttagct |
8516290 |
T |
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| Q |
312 |
attttagtttatttacttgtacaacaattatactggtcaaatg |
354 |
Q |
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| T |
8516291 |
attgtagtttatttacttgtacaacaattatacaggacaaatg |
8516333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 485 - 690
Target Start/End: Original strand, 8516430 - 8516635
Alignment:
| Q |
485 |
aatacattgtaacattgatatgaaatgattgcaagaatgtggcatagtcatagnnnnnnnnnnaacacttgcttgaaattgtcatagaaactcaaactca |
584 |
Q |
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| T |
8516430 |
aatacattgtaacattgatatgaaatgattgtaagaatgtggcatagtcatagttttttttttaacacttgcttgaaattgtcatagaaactcaaactca |
8516529 |
T |
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| Q |
585 |
aactcacctcaaaatcatgagacatatacccacttccataatatgacaatgttatttgcagtagttgcaagagacatgattccatgtgtaaggagatgtt |
684 |
Q |
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| T |
8516530 |
aactcacctcaaaatcatgagacatatacccacttccataatatgacaatgttatttgcagtagttgcaagagacatgattccatgtgtaaggagatgtt |
8516629 |
T |
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| Q |
685 |
gttcct |
690 |
Q |
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|||||| |
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| T |
8516630 |
gttcct |
8516635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 395 - 530
Target Start/End: Original strand, 8525369 - 8525504
Alignment:
| Q |
395 |
ctctttgaattatgtactcaattcattttcactttaagaattgatctcaagcaatcatatgtggtttttctcaccacaaactcagacttcaatacattgt |
494 |
Q |
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| T |
8525369 |
ctctttgatttatgcactcaattcattttcactataagaattgatctcaaacaatcctatgtgatttttctcaccacaaactcagacttaaacacattgt |
8525468 |
T |
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| Q |
495 |
aacattgatatgaaatgattgcaagaatgtggcata |
530 |
Q |
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| T |
8525469 |
aacattgatataaaataattgtaagaatgtggcata |
8525504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 8516379 - 8516432
Alignment:
| Q |
351 |
aatgtaagttaaggtgttagaagaatagtatgtaagaatgtaagctctttgaat |
404 |
Q |
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| T |
8516379 |
aatgtaagttaaggtgttagaagattagtatgtaagaatgtaagctctttgaat |
8516432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 55372100 - 55372230
Alignment:
| Q |
86 |
tttggaattgtggtttcagggacagttacagcattctcagctgcaggggcaattggaattggagctggtatttggtacttgaagaaattgagagctactg |
185 |
Q |
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| T |
55372100 |
tttggaattctggctgcagggacagttactgctatttcagcttttggagcacttggaattggaggtggcatttggtacttaaagaaaatgaaagctaaag |
55372199 |
T |
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| Q |
186 |
caccagtcacatgtggagttcaaaccaatga |
216 |
Q |
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||||||| |||||||| ||||||| |||||| |
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| T |
55372200 |
caccagtaacatgtggggttcaaagcaatga |
55372230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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