View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20807_high_10 (Length: 377)

Name: NF20807_high_10
Description: NF20807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20807_high_10
NF20807_high_10
[»] chr5 (1 HSPs)
chr5 (9-300)||(2767908-2768203)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 2767908 - 2768203
Alignment:
Q  9 gattattctaatagaaaatcgaactcgaatagtaccaaagcttaatcaaatttaaccaaagttcatttttaaccacatgagctcaacgagttagttatca 108  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2767908 gattattctaatagaaaattgaactcgaatagtaccaaagcttaatcaaatttaaccaaagttcatttttaaccacatgagctcaacgagttagttatca 2768007  T
Q  109 aagtatacaaattgaatatatctatcatcacg----caaaaggattagtaaaattgcaagtatatatgtgtattattaatgcatatttccaaaacatttt 204  Q
    ||||||||||||||||||||||||||||||||    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2768008 aagtatacaaattgaatatatctatcatcacgtacgcaaaaggattagtacaattgcaagtatatatgtgtattattaatgcatatttccaaaacatttt 2768107  T
Q  205 tgtaataacaaaaccttctaatttaaaccaactttgttttctagaataacatgtaatatctggtttaatatctagcaataaggtattgcatgaaac 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2768108 tgtaataacaaaaccttataatttaaaccaactttgttttctagaataacatgtaatatctggtttaatatctagcaataaggtattgcatgaaac 2768203  T

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