View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20807_high_14 (Length: 292)

Name: NF20807_high_14
Description: NF20807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20807_high_14
NF20807_high_14
[»] chr1 (10 HSPs)
chr1 (17-276)||(8959952-8960220)
chr1 (17-236)||(8924790-8925009)
chr1 (17-276)||(8936431-8936696)
chr1 (23-236)||(9306717-9306930)
chr1 (17-200)||(9475210-9475393)
chr1 (39-236)||(9359326-9359523)
chr1 (23-236)||(9335572-9335785)
chr1 (17-188)||(9244985-9245156)
chr1 (17-189)||(8945925-8946097)
chr1 (236-276)||(8925021-8925061)
[»] chr3 (1 HSPs)
chr3 (17-188)||(9168458-9168629)
[»] chr6 (1 HSPs)
chr6 (39-189)||(15912712-15912862)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 8959952 - 8960220
Alignment:
Q  17 agttattgtagttgattgatttcacatagtatttacccgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  8959952 agttattgtagttgattgatttcacatagtatttacccgacaacaaagttaaggttgtgatgttgttttcgcaggataactcgtacctcggatcaccaca 8960051  T
Q  117 ggttgttggatcattcttaagtcgaaaaggatgtgatatgtttccaattttgccacatgaagaaggtggacaatgtgtttggttgctagtatttgtaatt 216  Q
     | |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  8960052 tgatgttgggtcatccttaagtcgaaaaggatgtgatatgtttccaattttgccacatgaagaaggtggacaatatgtttggttactagtatttgtaatt 8960151  T
Q  217 gcatcgcatgtttgatgat---------gtagtagcactactgctataatttggagtaagaataagaat 276  Q
    ||||| |||||||||||||         |||||||||||||| | |||||||||| |||||||||||||    
T  8960152 gcatcacatgtttgatgatgatgatgcagtagtagcactactaccataatttggattaagaataagaat 8960220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 8924790 - 8925009
Alignment:
Q  17 agttattgtagttgattgatttcacatagtatttacccgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca 116  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8924790 agttattgtagttgattgatttcacatagtatttactcgacaatagagttaaagttgttatgttgttttcgcaggataactcgtacctcggatcaccaca 8924889  T
Q  117 ggttgttggatcattcttaagtcgaaaaggatgtgatatgtttccaattttgccacatgaagaaggtggacaatgtgtttggttgctagtatttgtaatt 216  Q
    ||||||||||||||||||||||||||| |||| |  ||||||    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  8924890 ggttgttggatcattcttaagtcgaaacggatattttatgttgttgattttgccacatgaagaaggtggacaatatgtttggttactagtatttgtaatt 8924989  T
Q  217 gcatcgcatgtttgatgatg 236  Q
    ||||| ||||||||||||||    
T  8924990 gcatcacatgtttgatgatg 8925009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 8936431 - 8936696
Alignment:
Q  17 agttattgtagttgattgatttcacatagtatttacccgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| ||||||||||||||||||||||||||||| |||||||||||    
T  8936431 agttattgtagttgattgatttcacatagtatttacccgacaacagagttaacattgtgatgttgttttcgcaggataactcataccttggatcaccaca 8936530  T
Q  117 ggttgttggatcattcttaagtcgaaaaggatgtgatatgtttccaattttgccacatgaagaaggtggacaatgtgtttggttgctagtatttgtaatt 216  Q
     | ||||||||||| |||||||||||| ||||||| |||||||   |||||||| |||||||||||||||||   ||||||||| |||||||||||||||    
T  8936531 tgatgttggatcatccttaagtcgaaatggatgtgttatgtttgtgattttgccgcatgaagaaggtggacagaatgtttggttactagtatttgtaatt 8936630  T
Q  217 gcatcgcatgtttgatgatg------tagtagcactactgctataatttggagtaagaataagaat 276  Q
    ||||| ||||||||||||||      |||||||||| || | |||||||||| |||||||||||||    
T  8936631 gcatcacatgtttgatgatgatgcagtagtagcactcctaccataatttggattaagaataagaat 8936696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 9306930 - 9306717
Alignment:
Q  23 tgtagttgattgatttcacatagtatttacccgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggttgt 122  Q
    ||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||     
T  9306930 tgtagttgattgatttcacatagtatttacctgaaaacaaagttaacgttgtgatgttgttttcgcaggataactcatacctcggatcaccgcagtttgc 9306831  T
Q  123 tggatcattcttaagtcgaaaaggatgtgatatgtttccaattttgccacatgaagaaggtggacaatgtgtttggttgctagtatttgtaattgcatcg 222  Q
    ||||||||||| ||||||||||||||||  ||||||||  ||| |||||||||| || | |||||||| |||||||||  ||||| | ||||||||||      
T  9306830 tggatcattctgaagtcgaaaaggatgttttatgtttctgattgtgccacatgatgaggatggacaatatgtttggttattagtaatagtaattgcataa 9306731  T
Q  223 catgtttgatgatg 236  Q
    ||| ||||||||||    
T  9306730 catctttgatgatg 9306717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 9475393 - 9475210
Alignment:
Q  17 agttattgtagttgattgatttcacatagtatttacccgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca 116  Q
    |||||| |||||||||||| ||||||| ||| |||||||| | ||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  9475393 agttatcgtagttgattgacttcacattgtagttacccgaaagcaaagttaacgttgtgatgttgtttacgcaggataactcgtacctcggatcaccaca 9475294  T
Q  117 ggttgttggatcattcttaagtcgaaaaggatgtgatatgtttccaattttgccacatgaagaaggtggacaatgtgtttggtt 200  Q
    |||||||||||||||||| |||||||| ||||||  |||||||   | |||||||||||||||||||||||||| |||||||||    
T  9475293 ggttgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggtt 9475210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 39 - 236
Target Start/End: Original strand, 9359326 - 9359523
Alignment:
Q  39 cacatagtatttacccgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggttgttggatcattcttaagt 138  Q
    ||||||||||||||| || |||| ||||||    || ||||||||||||||||||||||| ||| |||||||||||||| ||||||| |||||| |||||    
T  9359326 cacatagtatttacctgaaaacagagttaacacggtgatgttgttttcgcaggataactcgtacttcggatcaccacagcttgttgggtcattcataagt 9359425  T
Q  139 cgaaaaggatgtgatatgtttccaattttgccacatgaagaaggtggacaatgtgtttggttgctagtatttgtaattgcatcgcatgtttgatgatg 236  Q
    |||||||||||||||||||||   |||||||| ||||||||||||||||||| |||||||||  | ||||| ||||||||||| ||||||||||||||    
T  9359426 cgaaaaggatgtgatatgtttgtgattttgccgcatgaagaaggtggacaatatgtttggttatttgtattagtaattgcatcacatgtttgatgatg 9359523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 9335572 - 9335785
Alignment:
Q  23 tgtagttgattgatttcacatagtatttacccgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggttgt 122  Q
    |||||||||||   | ||||||||||||||| || |||| |||||| | ||| ||||||||||||||||||||||| ||| | ||||||||||||||||     
T  9335572 tgtagttgatttcctgcacatagtatttacctgaaaacagagttaacgctgtgatgttgttttcgcaggataactcgtactttggatcaccacaggttgc 9335671  T
Q  123 tggatcattcttaagtcgaaaaggatgtgatatgtttccaattttgccacatgaagaaggtggacaatgtgtttggttgctagtatttgtaattgcatcg 222  Q
    ||| ||||||||||||||||| ||||||   ||||| |  |||||||| ||||||||||||||||||| ||||| |||  | ||||| |||||||||||     
T  9335672 tgggtcattcttaagtcgaaacggatgtttgatgttgctgattttgccgcatgaagaaggtggacaatatgttttgttatttgtattagtaattgcatca 9335771  T
Q  223 catgtttgatgatg 236  Q
    ||||||||||||||    
T  9335772 catgtttgatgatg 9335785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 9245156 - 9244985
Alignment:
Q  17 agttattgtagttgattgatttcacatagtatttacccgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca 116  Q
    |||| |||||||||||||  ||||||||||| |||||||| |||| ||||||   ||| ||||||||||||||||||||||||||| |||||||||||||    
T  9245156 agttgttgtagttgattgccttcacatagtacttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccaca 9245057  T
Q  117 ggttgttggatcattcttaagtcgaaaaggatgtgatatgtttccaattttgccacatgaagaaggtggaca 188  Q
    | ||||||| |||||| |||||||||| ||||||   ||||| |  ||||| ||||||||||||||||||||    
T  9245056 gcttgttgggtcattcataagtcgaaacggatgtttgatgttgctgatttttccacatgaagaaggtggaca 9244985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 8945925 - 8946097
Alignment:
Q  17 agttattgtagttgattgatttcacatagtatttacccgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca 116  Q
    |||||||||||||||||||||| |||| ||||||||| || | ||   ||||  |||| ||||| ||||||||||||||||| |||||||||||||| ||    
T  8945925 agttattgtagttgattgattttacatggtatttaccagaaagcagctttaacattgtgatgtttttttcgcaggataactcgtacctcggatcaccgca 8946024  T
Q  117 ggttgttggatcattcttaagtcgaaaaggatgtgatatgtttccaattttgccacatgaagaaggtggacaa 189  Q
    ||||| |||||||||||||||||| || ||||    |||||| |  |||||||||||||||||||| ||||||    
T  8946025 ggttgctggatcattcttaagtcggaagggatactttatgttgctgattttgccacatgaagaagggggacaa 8946097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 8925021 - 8925061
Alignment:
Q  236 gtagtagcactactgctataatttggagtaagaataagaat 276  Q
    |||||||||||||| | |||||||||| |||||||||||||    
T  8925021 gtagtagcactactaccataatttggattaagaataagaat 8925061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 9168458 - 9168629
Alignment:
Q  17 agttattgtagttgattgatttcacatagtatttacccgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca 116  Q
    |||| ||||||||||||||||||||||||||||||||| | |||| | |||  ||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  9168458 agtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttttcacaggataactcgtacctcggatcaccaca 9168557  T
Q  117 ggttgttggatcattcttaagtcgaaaaggatgtgatatgtttccaattttgccacatgaagaaggtggaca 188  Q
    | ||||||||||||| |||||||| || ||||||  ||||||||  ||||||||||||||||||||||||||    
T  9168558 gtttgttggatcatttttaagtcggaacggatgttttatgtttctcattttgccacatgaagaaggtggaca 9168629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 189
Target Start/End: Complemental strand, 15912862 - 15912712
Alignment:
Q  39 cacatagtatttacccgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggttgttggatcattcttaagt 138  Q
    ||||||||| ||||| || |||| | |||| ||||| ||||||||||||||||||||||| || |||||||| |||||||| | ||| ||||||||||||    
T  15912862 cacatagtacttacctgaaaacagatttaaggttgtgatgttgttttcgcaggataactcgtagctcggatccccacaggtcgctgggtcattcttaagt 15912763  T
Q  139 cgaaaaggatgtgatatgtttccaattttgccacatgaagaaggtggacaa 189  Q
    ||||| ||||||  |||||| |  ||||| || |||||||||| |||||||    
T  15912762 cgaaatggatgttttatgttgctgattttaccgcatgaagaagttggacaa 15912712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University