View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20807_high_17 (Length: 267)
Name: NF20807_high_17
Description: NF20807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20807_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 14294944 - 14295190
Alignment:
| Q |
9 |
agagacatgttatgttcttttggcttctttgaggtgcacttcacaggcgttgctaacatgaatttgaagagcgattcagaagactaaaacttaagttgtt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14294944 |
agagacatgttatgttcttttggcttctttgaggcgcgcttcacaggcgttgctaacatgaatttgaagagcgattcagaagactaaaacttaagttgtt |
14295043 |
T |
|
| Q |
109 |
agtgttaagtttaaagcgaacaattagcttaaaatctcaatcacaatcatttggtttccttttctgtatttgttgaccctttattcctgtaagtatgttt |
208 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14295044 |
agtaataagtttaaagcgaacgattagcttaaaatctcaatcacaatcatttggtttccttttctgtatttgttgaccctttattcctgtaagtatgttt |
14295143 |
T |
|
| Q |
209 |
tgtttcgaaggatttaatgatttatgatccccttggtagttgttctt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14295144 |
tgtttcgaaggatttaatgatttatgatccccttggtagttgttctt |
14295190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University