View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20807_high_2 (Length: 696)
Name: NF20807_high_2
Description: NF20807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20807_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 536; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 678
Target Start/End: Complemental strand, 24987691 - 24987012
Alignment:
| Q |
1 |
atatgtatgtgtttaaatttaatgttgatatgcaaaatagatcctctacatcacgcttaattgcacatctgatcataaatcgttagattaagagagggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24987691 |
atatgtatgtgtttaaatttaatgttgatatgcaaaatagatcctctacatcacgcttaattgcacatctgatcataaatcgttagattaagagagggaa |
24987592 |
T |
|
| Q |
101 |
actctcta--gctatcctaatataacggtccaacctgcaccataaagaattcatggccgttcatttggggaaaaaatcaacggacatgtggaactannnn |
198 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24987591 |
actctctatagctatcctaatataacggtccaacctgcaccataaagaattcatggccgttcatttggggaaaaaatcaacggacatgtggaactacttt |
24987492 |
T |
|
| Q |
199 |
nnnnnnnnnnnnncaattagcctaatggctagaaattcactccttaattaatgcgaataagtgaagaatccagagttcgaacccagtcccttacatattg |
298 |
Q |
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| T |
24987491 |
tttttttttt---caattagcctaatggctagaaatttactccttaattaatgcgaataagtgaagaatccagagttcgaacccagccccttacatattg |
24987395 |
T |
|
| Q |
299 |
caatgtccatgctaactgagatatgttcacgtggaccggaactcctttctttgggtatgtcagatattgcaagttccat--tcaatttagtgcaacattt |
396 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24987394 |
cactgtccatgctaagtgagatatgttcacgtggaccggaactcctttctttaggcatgtcagatattgcaagttccatattcaatttagtgcaacattt |
24987295 |
T |
|
| Q |
397 |
tccttttcnnnnnnngaaaa-taacaaaggaaattttgtacaatttgctatctttcccttaatgatgtatttgatgctagaatcttgatcaatagtcatt |
495 |
Q |
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|||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24987294 |
tccttttcaaaaaaaaaaaaataacaaaggaaattttgtgcaatttgctatctttcccttaatgatgtatttgatgctagaatcttgatcaatagtcatt |
24987195 |
T |
|
| Q |
496 |
ttcagcataagtagcatctgaatatcttgatgatccaacatagcataagtttttgcttgctttacttatatattgaattgcctagttacatagcatgaat |
595 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24987194 |
ttcagcataagtagcatctgaataccttgatgatccaacatagcataagtttttgcttgctttacttatatattgaattgcctagttacatagcatgaat |
24987095 |
T |
|
| Q |
596 |
gaacttctcatatatataaatgaaatggcttgcagaaaaaataagagatggaggtaatggagatgtagccgacgacgcatatc |
678 |
Q |
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| T |
24987094 |
ggacttctcatatatataaatgaaatggcttgcagaaaaaataagagatggaggtaatggagatgtagccgacgacgcatatc |
24987012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 571 - 671
Target Start/End: Original strand, 25000013 - 25000111
Alignment:
| Q |
571 |
aattgcctagttacatagcatgaatgaacttctcatatatataaatgaaatggcttgcagaaaaaataagagatggaggtaatggagatgtagccgacga |
670 |
Q |
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||||||||||||||||| |||| | || | ||||||| ||| ||||||||| |||||||||||||| |||||| || ||||||||||||||||||||| |
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| T |
25000013 |
aattgcctagttacataacatgta--aattcctcatatttatcaatgaaatgtcttgcagaaaaaattagagatagacataatggagatgtagccgacga |
25000110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 677
Target Start/End: Complemental strand, 25047508 - 25047434
Alignment:
| Q |
603 |
tcatatatataaatgaaatggcttgcagaaaaaataagagatggaggtaatggagatgtagccgacgacgcatat |
677 |
Q |
| |
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|||||| ||| ||||||||||| |||||||||||||| |||| || ||| |||||||||||| |||||| ||||| |
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| T |
25047508 |
tcatatttattaatgaaatggcctgcagaaaaaataaaagatagaagtactggagatgtagctgacgactcatat |
25047434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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