View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20807_high_9 (Length: 410)

Name: NF20807_high_9
Description: NF20807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20807_high_9
NF20807_high_9
[»] chr5 (3 HSPs)
chr5 (13-390)||(19586889-19587265)
chr5 (38-390)||(19582201-19582555)
chr5 (38-390)||(19591030-19591384)
[»] chr8 (1 HSPs)
chr8 (123-191)||(20789355-20789423)


Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 19587265 - 19586889
Alignment:
Q  13 atactccaaagtccaaattgcaaaagagttccagcttcacataaatatatttgggcacctgaaacaagaatcatactattgcatatgagtactttaatta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19587265 atactccaaagtccaaattgcaaaagagttccagcttcacataaatatatttgggcacctgaaacaagaatcaaactattgcatatgagtactttaatta 19587166  T
Q  113 aaatagtatata--ctaatgaatgaaacactgcatgagttaatattctttgtaaccaatttgattccaataatgtaaatttcaataactcatgcatggag 210  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  19587165 aaatagtatatatactaattaatgaaacactgcatgagttaatattctttgtaaccaatttgatcccaataatgtaaatttcaagaactcatgcatggag 19587066  T
Q  211 attaattaaactttaactatcaccttaataacatgaaattaaattctcttcattaagattatgaaattaattaaacttgatcaatatataaatcagaaat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  19587065 attaattaaactttaactatcaccttaataacatgaaattaaattctcttcattaagattatgaaattaattaaacttgatcaatatataaatcagaa-- 19586968  T
Q  311 tagccacaattaagtatcccttaattaaagaattcatgaagaatgttctgatgagtccaatgatgatgaaaacaactaac 390  Q
     ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19586967 -agccagaattaagtatcccttaattaaagaattcatgaagaatgttctgatgagtccaatgatgatgaaaacaactaac 19586889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 38 - 390
Target Start/End: Original strand, 19582201 - 19582555
Alignment:
Q  38 gagttccagcttcacataaatatatttgggcacctgaaacaagaatcatactattgcatatgagtactttaattaaaatagtatatactaatgaatgaaa 137  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||            |||||||||||||| |||  |||||||||||||    
T  19582201 gagttccagcttcacacaaatatatttggggacctgaaacaagaatcataatattt-----------tttaattaaaatagcata--ctaatgaatgaaa 19582287  T
Q  138 cactgcat---gagttaatattctttgtaaccaatttgattccaataatgtaaatttcaataactcatgcatg----gagattaattaaactttaactat 230  Q
    ||||| ||   ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  19582288 cactgaataatgagttaatattctttgttaccaatttgatcccaataacgtaaatttcaataactcatgcatgcatggagattaattaaactttaactat 19582387  T
Q  231 caccttaat-----------aacatgaaattaaattctcttcattaagattatgaaattaattaaacttgatcaatatataaatcagaaattagccacaa 319  Q
    |||||||||           ||||||||| ||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||   ||||| ||    
T  19582388 caccttaatttcatttcaataacatgaaagtaaattctcttcattaagattctagaattaattaaacttgatcaatatataaatcagaa---agccaaaa 19582484  T
Q  320 ttaagtatcccttaattaaagaattcatgaagaatgttctgatgagtccaatgatgatgaaaacaactaac 390  Q
      |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  19582485 caaagtatcccttaataaaagaattcatcaagaatgttctgatgagtccaatgatgatgaaaactactaac 19582555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 38 - 390
Target Start/End: Complemental strand, 19591384 - 19591030
Alignment:
Q  38 gagttccagcttcacataaatatatttgggcacctgaaacaagaatcatactattgcatatgagtactttaattaaaatagtatatactaatgaatgaaa 137  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||            |||||||||||||| |||  |||||||||||||    
T  19591384 gagttccagcttcacacaaatatatttggggacctgaaacaagaatcataatattt-----------tttaattaaaatagcata--ctaatgaatgaaa 19591298  T
Q  138 cactgcat---gagttaatattctttgtaaccaatttgattccaataatgtaaatttcaataactcatgcatg----gagattaattaaactttaactat 230  Q
    ||||| ||   ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  19591297 cactgaataatgagttaatattctttgttaccaatttgatcccaataacgtaaatttcaataactcatgcatgcatggagattaattaaactttaactat 19591198  T
Q  231 caccttaat-----------aacatgaaattaaattctcttcattaagattatgaaattaattaaacttgatcaatatataaatcagaaattagccacaa 319  Q
    |||||||||           ||||||||| ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||   |||| ||    
T  19591197 caccttaatttcatttcaataacatgaaagtaaattctcttcattaagattctagaattaattaaacttgatcaatatataaatcagaaa---gccaaaa 19591101  T
Q  320 ttaagtatcccttaattaaagaattcatgaagaatgttctgatgagtccaatgatgatgaaaacaactaac 390  Q
      |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  19591100 caaagtatcccttaataaaagaattcatcaagaatgttctgatgagtccaatgatgatgaaaactactaac 19591030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 20789423 - 20789355
Alignment:
Q  123 tactaatgaatgaaacactgcatgagttaatattctttgtaaccaatttgattccaataatgtaaattt 191  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  20789423 tactaataaatgaaacactgcatgagttaatattctttgtaaccaatttgatcccaataacgtaaattt 20789355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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