View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20807_low_13 (Length: 331)

Name: NF20807_low_13
Description: NF20807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20807_low_13
NF20807_low_13
[»] chr1 (5 HSPs)
chr1 (142-243)||(17221298-17221399)
chr1 (18-88)||(17222203-17222273)
chr1 (239-315)||(17220932-17221008)
chr1 (240-315)||(17212191-17212266)
chr1 (92-149)||(17212658-17212715)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 17221399 - 17221298
Alignment:
Q  142 ttatccaagccatcacaacctttgtttatctttgcatttgtggaactaatgggatgatttatgatctcaaacgtttaagtgtagagcatttaacaattga 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17221399 ttatccaagccatcacaacctttgtttatctttgcatttgtggaactaatgggatgattgatgatctcaaacgtttaagtgtagagcatttaacaattga 17221300  T
Q  242 ag 243  Q
    ||    
T  17221299 ag 17221298  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 17222273 - 17222203
Alignment:
Q  18 actttgatgatgaatacgtctaattttatatttgactatttgaggttggttaatattaaccatctcaacaa 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17222273 actttgatgatgaatacgtctaattttatatttgactatttgaggttggttaatatcaaccatctcaacaa 17222203  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 17221008 - 17220932
Alignment:
Q  239 tgaagccaaacatatttcaccttccctgtgtcccattcaccccggaaagtttctatttgtggttgaaacacaaacct 315  Q
    ||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  17221008 tgaagccaaacatatttcaccttccttgtgtcccattcgccccgaaaagtttctatttgtggttgaaacacaaacct 17220932  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 240 - 315
Target Start/End: Complemental strand, 17212266 - 17212191
Alignment:
Q  240 gaagccaaacatatttcaccttccctgtgtcccattcaccccggaaagtttctatttgtggttgaaacacaaacct 315  Q
    ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  17212266 gaagccaaatatatttcaccttccctgtgtcccattcgccctggaaagtttctatttgtggttgaaacacaaacct 17212191  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 17212715 - 17212658
Alignment:
Q  92 taagaatatcatcccaaattttctatttctataaacagttgttagaagatttatccaa 149  Q
    ||||||||||||  ||| ||||||||||||||||||| ||||||||| | ||||||||    
T  17212715 taagaatatcatttcaatttttctatttctataaacacttgttagaaaagttatccaa 17212658  T

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