View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20807_low_24 (Length: 248)

Name: NF20807_low_24
Description: NF20807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20807_low_24
NF20807_low_24
[»] chr7 (2 HSPs)
chr7 (1-185)||(18087767-18087952)
chr7 (177-231)||(18086234-18086288)
[»] chr6 (2 HSPs)
chr6 (1-46)||(22014166-22014211)
chr6 (1-46)||(28040899-28040944)
[»] chr4 (1 HSPs)
chr4 (1-46)||(4763443-4763488)
[»] chr3 (3 HSPs)
chr3 (1-46)||(6911279-6911324)
chr3 (1-46)||(28058407-28058452)
chr3 (1-46)||(28068832-28068877)
[»] chr2 (2 HSPs)
chr2 (1-46)||(4406357-4406402)
chr2 (1-46)||(44324274-44324319)
[»] chr1 (2 HSPs)
chr1 (1-46)||(16100942-16100987)
chr1 (1-46)||(17653347-17653392)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 18087952 - 18087767
Alignment:
Q  1 accaactagaagggaaacacacatggacacgaatagttattcttcttaatttgatatgaaaattgctctgcaaatatttaatggcagtaaatactctt-a 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| ||||||||||| |    
T  18087952 accaactagaagggaaatacacatggacacgaatagttattcttcataatttaatatgaaaattgctctgcagatatttaatggcattaaatactcttca 18087853  T
Q  100 tgagtaagttcagaaaatacctcattgtcgttttcaaagttagaatcagaatcagatgattgatgcaaggtccatcatagaaagat 185  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||| ||||    
T  18087852 tgagtaagtttagaaaatacctcattgtcgttttcaaagttagaatcagattcagatgattgatgtcgggtccatcatagagagat 18087767  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 18086288 - 18086234
Alignment:
Q  177 tagaaagattttcttcctcttagggtaatccttattttccctgaagctggatcct 231  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||||| || |||||    
T  18086288 tagaaagatttgcttcctcttagggtcatctttattttccctgaagttgaatcct 18086234  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22014211 - 22014166
Alignment:
Q  1 accaactagaagggaaacacacatggacacgaatagttattcttct 46  Q
    ||||||||||||||||||||||| || ||||| || ||||||||||    
T  22014211 accaactagaagggaaacacacaagggcacgattatttattcttct 22014166  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28040944 - 28040899
Alignment:
Q  1 accaactagaagggaaacacacatggacacgaatagttattcttct 46  Q
    ||||||||||||||||||||||| |||||||| || ||||| ||||    
T  28040944 accaactagaagggaaacacacaaggacacgattatttatttttct 28040899  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4763443 - 4763488
Alignment:
Q  1 accaactagaagggaaacacacatggacacgaatagttattcttct 46  Q
    |||||||||||||||||||||||  | |||||||||||||| ||||    
T  4763443 accaactagaagggaaacacacaatggcacgaatagttatttttct 4763488  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6911279 - 6911324
Alignment:
Q  1 accaactagaagggaaacacacatggacacgaatagttattcttct 46  Q
    |||||||||||||||||||||||  | |||||||||||||| ||||    
T  6911279 accaactagaagggaaacacacaatggcacgaatagttatttttct 6911324  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28058407 - 28058452
Alignment:
Q  1 accaactagaagggaaacacacatggacacgaatagttattcttct 46  Q
    ||||||||||||||||||||||| || |||||||| ||||| ||||    
T  28058407 accaactagaagggaaacacacaagggcacgaatatttatttttct 28058452  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28068832 - 28068877
Alignment:
Q  1 accaactagaagggaaacacacatggacacgaatagttattcttct 46  Q
    ||||||||||||||||||||||| || |||||||| ||||| ||||    
T  28068832 accaactagaagggaaacacacaagggcacgaatatttatttttct 28068877  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4406402 - 4406357
Alignment:
Q  1 accaactagaagggaaacacacatggacacgaatagttattcttct 46  Q
    |||||||||||||||||||||||  | |||||||||||||| ||||    
T  4406402 accaactagaagggaaacacacaatggcacgaatagttatttttct 4406357  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44324319 - 44324274
Alignment:
Q  1 accaactagaagggaaacacacatggacacgaatagttattcttct 46  Q
    ||||||||||||||||||||||| || ||||| || ||||||||||    
T  44324319 accaactagaagggaaacacacaagggcacgattatttattcttct 44324274  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16100987 - 16100942
Alignment:
Q  1 accaactagaagggaaacacacatggacacgaatagttattcttct 46  Q
    |||||||||||||||||||||||||| ||||| || ||||| ||||    
T  16100987 accaactagaagggaaacacacatggtcacgattatttatttttct 16100942  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17653347 - 17653392
Alignment:
Q  1 accaactagaagggaaacacacatggacacgaatagttattcttct 46  Q
    ||||||||||||||||||||||| || ||||| || ||||||||||    
T  17653347 accaactagaagggaaacacacaagggcacgattatttattcttct 17653392  T

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