View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20807_low_3 (Length: 494)
Name: NF20807_low_3
Description: NF20807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20807_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 190 - 391
Target Start/End: Original strand, 2768454 - 2768655
Alignment:
| Q |
190 |
gagtgaatattaatttacctcttcaaaaaccgagctttcatgtatagaaaaataaataagcatgtgacttgcactgatactttttcagctctaatttagt |
289 |
Q |
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| T |
2768454 |
gagtgaatattaatttacctcttcaaaaaccgagctttcatgtatagaaaaataaataagcatgtgacttgcactgatactttttcagctctaatttagt |
2768553 |
T |
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| Q |
290 |
gatccattaaacacggctcatacacatgagctttgcacagttgaaaaatatatattttagtataagataataaatttttgaaaacttaagagtttctagc |
389 |
Q |
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| T |
2768554 |
gatccattaaacacggctcatacacatgagctttgcacagttgaaaaatatatattttagtataagataataaatttttgaaaacttaagagtttctagc |
2768653 |
T |
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| Q |
390 |
ta |
391 |
Q |
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|| |
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| T |
2768654 |
ta |
2768655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 2768287 - 2768426
Alignment:
| Q |
23 |
tgaagtagtaatagtgataaacatgaaagaattaaactatcaccttgaagagctgagtaacaagtttaagaagatctttgtgtggttgttctcttgaaaa |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2768287 |
tgaagtagtaatagtgataaacatgaaagaattaaactatcaccttgaagagctgagtaacaagtttaagaagatctttgtgtggttgttctcttgaaaa |
2768386 |
T |
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| Q |
123 |
ggagagagttgaaatgaatggcttcacttcaaatgaacac |
162 |
Q |
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| T |
2768387 |
ggagagagttgaaatgaatggcttcacttcaaatgaacac |
2768426 |
T |
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