View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20807_low_4 (Length: 463)
Name: NF20807_low_4
Description: NF20807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20807_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 23 - 454
Target Start/End: Original strand, 6156984 - 6157415
Alignment:
| Q |
23 |
tgatgtataggtagagttnnnnnnnntacgagactaagataaatgaacataggtgtttaaacactagataaatttgttatcataaaacaaagatgaaaaa |
122 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6156984 |
tgatgtataggtagagttaaaaaaaatacgagactaagataaatgaacataggtgtttaaacactagataaatttgttatcataaaacaaagatgaaaaa |
6157083 |
T |
|
| Q |
123 |
ccttcagctgcat--cataactaaactattaagtggtggcatgagagaaataaataaacaa-gcaaaagattaccaaaaagatgatcttcaagacatccc |
219 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6157084 |
ccttcagctgcatatcataactatactattaagtggtggcatgagagtaataaataaacaaagcaaaagattaccaaaaagatgatcttcaagacatccc |
6157183 |
T |
|
| Q |
220 |
ttaggcatgtattcataaaccaaaagcttttgatctatatttgtgcaatagccaattaacttaacaagataattggaatgacgcaacacgcatagcataa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6157184 |
ttaggcatgtattcataaaccaaaagcttttgatctatacttgtgcaatagccaattaacttaacaagataattggaatgacgcaacacgcatagcataa |
6157283 |
T |
|
| Q |
320 |
gaacctcggtcagaaattcctgacaaccttgaccaccattaggatttaactgtttcactgcaacaagctgcaaatgcaacaaaatatagcaaagtgtgtg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6157284 |
gaacctcggtcagaaattcctgacaaccttgaccaccattaggatttaaccgtttcactgcaacaagctgcaaatgcaacaaaatatagcaaagtgtgtg |
6157383 |
T |
|
| Q |
420 |
acgtttgtaacttaaataatgaccaaaagtataat |
454 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |
|
|
| T |
6157384 |
acgtttgtaattta---aatgaccaaaagtataat |
6157415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 194 - 391
Target Start/End: Original strand, 56020917 - 56021111
Alignment:
| Q |
194 |
caaaaagatgatcttcaagacatcccttaggcatgtattcataaaccaaaagcttttgatctatatttgtgcaatagccaattaacttaacaagataatt |
293 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||||||||| | |
|
|
| T |
56020917 |
caaaaagatgagcttcaagagatcccttaggcatgtattcataaaccaaaagcatttgatctccattggtgcaataaccaattaacttaacaagatta-- |
56021014 |
T |
|
| Q |
294 |
ggaatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccattaggatttaactgtttcactgcaacaagctgca |
391 |
Q |
| |
|
| |||||||| ||| | ||| ||| || ||| |||| |||||| ||||| ||||||| ||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
56021015 |
-gcatgacgcagcacacttagaatatcaagctctgtcataaattcgtgacagccttgacaaccatcaggatttaactgttttactgcaacaagctgca |
56021111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 184 - 393
Target Start/End: Original strand, 54033244 - 54033450
Alignment:
| Q |
184 |
aaaagattaccaaaaagatgatcttcaagacatcccttaggcatgtattcataaaccaaaagcttttgatctatatttgtgcaatagccaattaacttaa |
283 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||| |||||||| || ||||| |||||||||||||||| |
|
|
| T |
54033244 |
aaaaggttaccaaaaagatgatcttcgagagatcccataggcatgtactcataaaccaaaagcctttgatctccatcagtgcagtagccaattaacttaa |
54033343 |
T |
|
| Q |
284 |
caagataattggaatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccattaggatttaactgtttcactgcaac |
383 |
Q |
| |
|
| || ||| |||||| | | || || || |||||||||||| |||| |||||||||| ||||||||| ||||| | || |||| |||||||| ||||| |
|
|
| T |
54033344 |
ccag---attagaatgatgtagcaagcttaacataagaacctcagtcacaaattcctgaaaaccttgacgaccatcatgacttaattgtttcacagcaac |
54033440 |
T |
|
| Q |
384 |
aagctgcaaa |
393 |
Q |
| |
|
|||||||||| |
|
|
| T |
54033441 |
aagctgcaaa |
54033450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 54033134 - 54033190
Alignment:
| Q |
86 |
ctagataaatttgttatcataaaacaaagatgaaaaaccttcagctgcatcataacta |
143 |
Q |
| |
|
|||||||||||| || ||||||| |||||||||||| |||||||||| |||||||||| |
|
|
| T |
54033134 |
ctagataaatttattgtcataaa-caaagatgaaaagccttcagctgtatcataacta |
54033190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 28342031 - 28342080
Alignment:
| Q |
190 |
ttaccaaaaagatgatcttcaagacatcccttaggcatgtattcataaac |
239 |
Q |
| |
|
|||||||| ||||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
28342031 |
ttaccaaatagatgataatcaagacttccattaggcatgtattcataaac |
28342080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University