View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20807_low_6 (Length: 431)
Name: NF20807_low_6
Description: NF20807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20807_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 15 - 421
Target Start/End: Complemental strand, 11331218 - 11330811
Alignment:
| Q |
15 |
acaacaacaaaacataaagtagaaaaacattgaacatctaagacgaacctgagaaatttgttctgcatggctgaaatatttttgatgatgcgcaggaagt |
114 |
Q |
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| T |
11331218 |
acaacaacaaaacataaagtagaaaaacattgaacatctaagacgaacctgagaaatttgttctgcatggctgaaatatttttgatgatgcgccggaagt |
11331119 |
T |
|
| Q |
115 |
agttaaaggaaactgtgaagtcatataacatgaaaaagaaagaatcatggaaatacgcaaacaggcatgttaggataaccatttccttgtatcgatttct |
214 |
Q |
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| T |
11331118 |
agttaaagaaaactgtgaagtcatataacatgaaaaagaaagaatcatggaaatacgcaaacaggcatgttaggataaccatttccttgtatcgatttct |
11331019 |
T |
|
| Q |
215 |
attgactacatgatttaaaccattcaaatataaagcttgaagaatctaaatgagattatgtacattcattaccgagaaagtgcctatcatctaactagtt |
314 |
Q |
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| T |
11331018 |
attgactacatgatttaaaccaatcaaatataaagcttgaagaatctaaatgagattatgtacattcattatcgagaaagtgcctatcatctaactagtt |
11330919 |
T |
|
| Q |
315 |
ggttggaacacaaataagtgactagcaagcaaaacaata-nnnnnnnatgatgcctgaaaacaagtagaagagctagcaatatttacttactatcaattg |
413 |
Q |
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| T |
11330918 |
ggttggaacacaaataagcgactagcaagcaaaacaatattttttttatgatgcctgaaaacaagtagaagagctagcaatatttacttactatcaattg |
11330819 |
T |
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| Q |
414 |
tcttcatc |
421 |
Q |
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| T |
11330818 |
tctccatc |
11330811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 7177274 - 7177405
Alignment:
| Q |
13 |
caacaacaacaaaacataaagtagaaaaa-cattgaacatctaagacgaacctgagaaatttgttctgcatggctgaaa-tatttttgatgatgcgcagg |
110 |
Q |
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|||||| |||||||||||||| |||||| |||| ||||| ||||| |||||| |||||||| ||||||||||||||| ||||||||| |||||| || |
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| T |
7177274 |
caacaataacaaaacataaaggggaaaaaacattatacatccaagacaaacctgggaaatttgctctgcatggctgaaaatatttttgaagatgcgacgg |
7177373 |
T |
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| Q |
111 |
aagtagttaaaggaaactgtgaagtcatataa |
142 |
Q |
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| T |
7177374 |
aagtagttaaagaaaactgtggagtcatataa |
7177405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 7178030 - 7178085
Alignment:
| Q |
361 |
atgatgcctgaaaacaagtagaagagctagcaatatttacttactatcaattgtct |
416 |
Q |
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| T |
7178030 |
atgatgcctaaatacaagtggaaaagctaacaatatttacttactatcaattgtct |
7178085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 46356773 - 46356875
Alignment:
| Q |
41 |
acattgaacatctaagacgaacctgagaaatttgttctgcatggctgaaa-tatttttgatgatgcgcaggaagtagttaaaggaaactgtgaagtcata |
139 |
Q |
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|||||| ||||||| || ||||||| |||||||| | |||||||||||| ||||||||| |||| | | || |||||||| |||||||||||||||| |
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| T |
46356773 |
acattgtacatctaggatgaacctgggaaatttgcacggcatggctgaaaatatttttgaagatgtgacagtagcagttaaagaaaactgtgaagtcata |
46356872 |
T |
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| Q |
140 |
taa |
142 |
Q |
| |
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||| |
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| T |
46356873 |
taa |
46356875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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