View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20807_low_7 (Length: 427)
Name: NF20807_low_7
Description: NF20807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20807_low_7 |
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| [»] scaffold0288 (1 HSPs) |
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| [»] scaffold0301 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 409
Target Start/End: Complemental strand, 11330630 - 11330254
Alignment:
| Q |
21 |
gggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctctaacaatttactaacaagtaacaactaa |
120 |
Q |
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| T |
11330630 |
gggacgttgaaggagatttaagaaggaggttccgagttcgatccccgg------------cccccttccctctaaaaatttactaacaagtaacaactaa |
11330543 |
T |
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| Q |
121 |
catttgcctatagaaaaaagttatacttattgattgaagttgctgcatgaatgtccaatttcacttccctttagagtttgatgaattttactgctataat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11330542 |
catttgcctatagaaaaaagttatacttattgattgaagttgctgcatgaatgtccaatttcacttccctttagagtttgatgaattttactgctataat |
11330443 |
T |
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| Q |
221 |
ctaagtaggcactctacttagggtaatatctaggctaacctgctcaacatagtattggacattgttaatattagtcttttctgaaaggttatgttactta |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11330442 |
ctaagtaggcactctacttagggtaatatctaggctaacctgctcaacatagtattggacattgttaatattagtcttttctgaaaggttatgttactta |
11330343 |
T |
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| Q |
321 |
ttccattcgctatatctaataagatgatcagtagcaactgaaaatttaatcaaactattatcttattcttgttccaatgtagtatgtac |
409 |
Q |
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| T |
11330342 |
ttccatttgctatatctaataagatgatcagtagcaactgaaaatttaatcaaactattatcttattcttgttccaatgtagtatgtac |
11330254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 9884 - 9979
Alignment:
| Q |
21 |
gggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctc-taacaatttactaacaagtaaca |
115 |
Q |
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|||| ||||||||||||||||||||||||| ||| ||| || ||| ||||||||||||||||||| | ||| ||||||||||||||||| ||||| |
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| T |
9884 |
gggatgttgaaggagatttaagaaggaggtcccgggtttgactcccagaaactaacatttccccctcctctcttaacaatttactaacaactaaca |
9979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 5362818 - 5362908
Alignment:
| Q |
21 |
gggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctctaacaatttactaacaagtaaca |
115 |
Q |
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|||| ||||||||||||||||||||||||| ||| |||| || || |||||||||||||| ||||||||||| ||||| ||||||||| ||||| |
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| T |
5362818 |
gggaggttgaaggagatttaagaaggaggtcccgtgttcaat-cctggaaactaacattt-ccccttccctccaacaa--tactaacaactaaca |
5362908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0301 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0301
Description:
Target: scaffold0301; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 5879 - 5967
Alignment:
| Q |
26 |
gttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctctaacaatttactaacaagtaaca |
115 |
Q |
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||||||||| ||||||||||||| || ||||||||| |||||||||| ||||| | ||||||| |||||||||||||||| ||||| |
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| T |
5879 |
gttgaaggaaatttaagaaggagattttcggttcgatccacggaaactaa-atttctctattccctccaacaatttactaacaactaaca |
5967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 35908605 - 35908657
Alignment:
| Q |
55 |
agttcgatccccggaaactaacatttcccccttccctctaacaatttactaac |
107 |
Q |
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| T |
35908605 |
agttggattcccagaaactaacatttccccctcccctctaacaatgtactaac |
35908657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 33911970 - 33912022
Alignment:
| Q |
55 |
agttcgatccccggaaactaacatttcccccttccctctaacaatttactaac |
107 |
Q |
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| T |
33911970 |
agttggattcccagaaactaacatttccccctcccctctaacaatgtactaac |
33912022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 38646660 - 38646732
Alignment:
| Q |
24 |
acgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctctaaca |
97 |
Q |
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| T |
38646660 |
acgttgaaggagattta-gatggatgttttgagttcgatcctcgaaaactaacatttctccctctcctctaaca |
38646732 |
T |
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