View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20808_high_30 (Length: 298)

Name: NF20808_high_30
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20808_high_30
NF20808_high_30
[»] chr6 (13 HSPs)
chr6 (2-298)||(33057625-33057921)
chr6 (93-298)||(33262682-33262887)
chr6 (93-284)||(9166822-9167013)
chr6 (94-298)||(33644288-33644492)
chr6 (132-298)||(33271881-33272047)
chr6 (93-298)||(33399110-33399315)
chr6 (93-298)||(33304540-33304745)
chr6 (143-298)||(33358923-33359078)
chr6 (95-298)||(33410061-33410264)
chr6 (121-298)||(31562596-31562773)
chr6 (101-298)||(33285674-33285871)
chr6 (93-298)||(33388216-33388421)
chr6 (190-298)||(28870013-28870121)
[»] scaffold1408 (1 HSPs)
scaffold1408 (94-297)||(704-907)
[»] scaffold0428 (1 HSPs)
scaffold0428 (94-297)||(6450-6653)
[»] chr2 (1 HSPs)
chr2 (104-298)||(17440638-17440832)
[»] chr4 (8 HSPs)
chr4 (151-298)||(31157273-31157420)
chr4 (171-298)||(31498873-31499000)
chr4 (200-298)||(31504032-31504130)
chr4 (171-282)||(31148375-31148486)
chr4 (171-285)||(31478818-31478932)
chr4 (219-267)||(31472411-31472459)
chr4 (187-237)||(31526524-31526574)
chr4 (187-285)||(31491627-31491725)
[»] chr7 (1 HSPs)
chr7 (195-285)||(6785236-6785326)


Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 2 - 298
Target Start/End: Complemental strand, 33057921 - 33057625
Alignment:
Q  2 gaaatgaagcagcagcatgatatacgtgaaagtgcatcacatcacctccctggcctaaaatggatcattttggctcacgattcatcacatatgttgcctt 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33057921 gaaaagaagcagcagcatgatatacgtgaaagtgcatcacatcacctccctggcctaaaatggatcattttggctcacgattcatcacatatgttgcctt 33057822  T
Q  102 ccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggctagaaagatt 201  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33057821 ccttgcatagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatgcaattgaatgtttacattggctagaaagatt 33057722  T
Q  202 aaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaatttttggaatct 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||    
T  33057721 aaatttagcgggaaacgattttgtgacattacctagcctgaggaagctatccaaacttgtatatttaaatttggagcattgcaaattgttggaatct 33057625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 93 - 298
Target Start/End: Complemental strand, 33262887 - 33262682
Alignment:
Q  93 tgttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggct 192  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||| |||| |||||||  ||||||||||| |||||||||||    
T  33262887 tgttgccttccttgcgtagtttacattgtttgcgtaatgttgacataagcttttgctatctacgccaagtgcctggcacaattgaatgcttacattggct 33262788  T
Q  193 agaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaatttttg 292  Q
    ||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  || |||    
T  33262787 agaaagattaaatttagggggaaatgattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaggttgttg 33262688  T
Q  293 gaatct 298  Q
    ||||||    
T  33262687 gaatct 33262682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 93 - 284
Target Start/End: Complemental strand, 9167013 - 9166822
Alignment:
Q  93 tgttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggct 192  Q
    |||||| ||||||||||||||||| |||||||||| | |||||||| |||| |||| ||||||||||  ||||||||||||||||||||||||  |||||    
T  9167013 tgttgcattccttgcgtagtttatattgtttgcgtgaagttgacattagctattgccatctaagccaattgcctgatacaattgaatgtttacggtggct 9166914  T
Q  193 agaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgca 284  Q
    |||||||||||| |||| ||||| |||||||| |||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  9166913 agaaagattaaacttagggggaatcgattttgcgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca 9166822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 94 - 298
Target Start/End: Original strand, 33644288 - 33644492
Alignment:
Q  94 gttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggcta 193  Q
    |||||| ||||||| ||| |||| |||||||||||   ||||||| |||| ||||  |||||||||||| |||||| |||||||||||||||||| ||||    
T  33644288 gttgccatccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgcta 33644387  T
Q  194 gaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaatttttgg 293  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || ||||| || ||||    
T  33644388 gaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttgg 33644487  T
Q  294 aatct 298  Q
    |||||    
T  33644488 aatct 33644492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 132 - 298
Target Start/End: Complemental strand, 33272047 - 33271881
Alignment:
Q  132 ttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacatt 231  Q
    ||||||| ||||||||| ||||| |||| || |||||| |||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |    
T  33272047 ttgacattagcttttgccatctacgccaagttcctgatgcaattgaatgtttacattggctagaaagattagatttagggggaaacaattttgtgacact 33271948  T
Q  232 acctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaatttttggaatct 298  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||    
T  33271947 acctagcctgaggaagctttccaaacttgtatatttaaatttggaacattgcaagttgttggaatct 33271881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 93 - 298
Target Start/End: Complemental strand, 33399315 - 33399110
Alignment:
Q  93 tgttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggct 192  Q
    ||||||| ||||||| ||| |||  ||||||||||   |||||||| ||||||||| |||||||||| || |||||| ||||||||  ||||||||||||    
T  33399315 tgttgccatccttgcatagcttagattgtttgcgtggagttgacattagcttttgcaatctaagccaagttcctgatgcaattgaagatttacattggct 33399216  T
Q  193 agaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaatttttg 292  Q
    ||||||||||||||||  ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| || ||||| || |||    
T  33399215 agaaagattaaatttaaagggaaacaattttgtgacactacctagcctgaggaagctttccgaacttgtatatttaaatttggaacactgcaagttgttg 33399116  T
Q  293 gaatct 298  Q
    ||||||    
T  33399115 gaatct 33399110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 93 - 298
Target Start/End: Complemental strand, 33304745 - 33304540
Alignment:
Q  93 tgttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggct 192  Q
    ||||||| ||||||| ||| |||  |||||||||  | |||||||| ||||||||| |||||||||| || |||||| |||||||||||||| | | |||    
T  33304745 tgttgccatccttgcatagcttagtttgtttgcgagacgttgacattagcttttgccatctaagccaagttcctgatgcaattgaatgtttatactcgct 33304646  T
Q  193 agaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaatttttg 292  Q
    |||||||||||| |||| ||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||| |||||| |||||||||  || |||    
T  33304645 agaaagattaaacttagagggaaacaattttgtgactctacctagcctgaggaagctttccaaacttgtatatttaaatttgcagcattgcatgttgttg 33304546  T
Q  293 gaatct 298  Q
    ||||||    
T  33304545 gaatct 33304540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 298
Target Start/End: Complemental strand, 33359078 - 33358923
Alignment:
Q  143 ttttgctatctaagccatgtgcctgatacaattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctga 242  Q
    |||||| ||||||| || || || ||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||    
T  33359078 ttttgccatctaagtcaagttcccgatgcaattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctga 33358979  T
Q  243 ggaagctttccaaacttgtatattttaatttggagcattgcaaatttttggaatct 298  Q
    |||||||||| |||||||||||||| |||||||| |||||||| || |||||||||    
T  33358978 ggaagctttctaaacttgtatatttaaatttggaacattgcaagttgttggaatct 33358923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 95 - 298
Target Start/End: Complemental strand, 33410264 - 33410061
Alignment:
Q  95 ttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggctag 194  Q
    ||||| || |||| ||| |||| |||||||||| | ||||| || ||||||||| |||||| ||| || |||||| |||||||| ||||||||| |||||    
T  33410264 ttgccatcattgcatagcttatattgtttgcgtcaagttgatattagcttttgccatctaaaccaagttcctgatgcaattgaaggtttacattcgctag 33410165  T
Q  195 aaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaatttttgga 294  Q
    |||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||  ||||| |||||||||| || |||||    
T  33410164 aaagattatatttagcgggaaactattttgtgacactacctagcttgaggaagctttccaaacttgaatatttagatttgcagcattgcaagttgttgga 33410065  T
Q  295 atct 298  Q
    ||||    
T  33410064 atct 33410061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 121 - 298
Target Start/End: Original strand, 31562596 - 31562773
Alignment:
Q  121 tttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggctagaaagattaaatttagcgggaaacgat 220  Q
    ||||||||  |||||||| |||||||||  ||||||||| ||||||||| ||||||||||||||   | |||||||||||||||||||| ||||||| ||    
T  31562596 tttgcgtacagttgacattagcttttgccgtctaagccaagtgcctgatgcaattgaatgtttaagctcgctagaaagattaaatttagggggaaactat 31562695  T
Q  221 tttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaatttttggaatct 298  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||| | || |||||||||    
T  31562696 tttgtgacactacctagcttgtggaagctttccaaacttgtatatttaaatttggagcattgcgagttgttggaatct 31562773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 101 - 298
Target Start/End: Complemental strand, 33285871 - 33285674
Alignment:
Q  101 tccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggctagaaagat 200  Q
    ||||||| ||| |||| |||||||||| | ||| |||| |||||||||  ||||||||| ||| |  || |||||||||||||| |||||||||||| ||    
T  33285871 tccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatat 33285772  T
Q  201 taaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaatttttggaatct 298  Q
    |||| |||| ||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || |||||||||    
T  33285771 taaacttagggggaaacaattttgtgacactacctagcctgagaaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatct 33285674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 93 - 298
Target Start/End: Complemental strand, 33388421 - 33388216
Alignment:
Q  93 tgttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggct 192  Q
    ||||||| ||| ||| ||| |||  |||||||||||| |||||||| ||||||||  ||||||  || || || ||| |||||||||||||||| |  ||    
T  33388421 tgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcact 33388322  T
Q  193 agaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaatttttg 292  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| || |||    
T  33388321 agaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttcttg 33388222  T
Q  293 gaatct 298  Q
     |||||    
T  33388221 aaatct 33388216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 190 - 298
Target Start/End: Original strand, 28870013 - 28870121
Alignment:
Q  190 gctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaattt 289  Q
    ||||||||||||||| |||  ||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||     
T  28870013 gctagaaagattaaacttacggggaaactattttgtgacactgcctagcctgaggaagctttccaaacttgaatatttaaatttggagcattgcaagttg 28870112  T
Q  290 ttggaatct 298  Q
    || ||||||    
T  28870113 tttgaatct 28870121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 94 - 297
Target Start/End: Complemental strand, 907 - 704
Alignment:
Q  94 gttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggcta 193  Q
    |||||||| ||| |||| ||||| ||||||||||||  ||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||||| |||||    
T  907 gttgccttgctttcgtattttatattgtttgcgtaacattgacattagcttttgccatctaagccatgttcctgatgcaattgaatgtttacatcggcta 808  T
Q  194 gaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaatttttgg 293  Q
    |||||||||||||||| ||||||  ||||||||||| |||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| || ||||    
T  807 gaaagattaaatttagggggaaataattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaatttggagcattgcaagttgttgg 708  T
Q  294 aatc 297  Q
    ||||    
T  707 aatc 704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 94 - 297
Target Start/End: Complemental strand, 6653 - 6450
Alignment:
Q  94 gttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggcta 193  Q
    |||||||| ||| |||| ||||| ||||||||||||  ||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||||| |||||    
T  6653 gttgccttgctttcgtattttatattgtttgcgtaacattgacattagcttttgccatctaagccatgttcctgatgcaattgaatgtttacatcggcta 6554  T
Q  194 gaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaatttttgg 293  Q
    |||||||||||||||| ||||||  ||||||||||| |||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| || ||||    
T  6553 gaaagattaaatttagggggaaataattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaatttggagcattgcaagttgttgg 6454  T
Q  294 aatc 297  Q
    ||||    
T  6453 aatc 6450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 104 - 298
Target Start/End: Original strand, 17440638 - 17440832
Alignment:
Q  104 ttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggctagaaagattaa 203  Q
    |||| ||| |||| |||||||||| | |||||||| || ||||||  ||||||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  17440638 ttgcatagcttatattgtttgcgtgaagttgacattagtttttgccgtctaagccaagtgccggatacaattgaatgtttacattgggtagaaagattaa 17440737  T
Q  204 atttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaatttttggaatct 298  Q
    |||||| |||||| ||||||| |||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||| || |||||||||    
T  17440738 atttagggggaaatgattttgcgacactacctagcctgaggaagctttcgaaacttgtatatttaaatttgcagcattgcaagttgttggaatct 17440832  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 298
Target Start/End: Complemental strand, 31157420 - 31157273
Alignment:
Q  151 tctaagccatgtgcctgatacaattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctt 250  Q
    ||||||| || | |||||| |||||| |||| ||| | | ||||||||||||||| ||| ||| ||| ||||||||||| | |||||||||||| |||||    
T  31157420 tctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagggagctt 31157321  T
Q  251 tccaaacttgtatattttaatttggagcattgcaaatttttggaatct 298  Q
    ||||||||||||||||| || ||||||||||||||  |||||||||||    
T  31157320 tccaaacttgtatatttaaacttggagcattgcaagcttttggaatct 31157273  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 171 - 298
Target Start/End: Original strand, 31498873 - 31499000
Alignment:
Q  171 caattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaa 270  Q
    |||||| ||||||||||||| |||||   |||||||||| ||||||| | |||||||||||||||||||||||| | |||||||||||||||| ||| ||    
T  31498873 caattggatgtttacattggttagaagagttaaatttagggggaaacaagtttgtgacattacctagcctgagggacctttccaaacttgtatgtttaaa 31498972  T
Q  271 tttggagcattgcaaatttttggaatct 298  Q
     || || ||||||||||| |||||||||    
T  31498973 cttagaacattgcaaattgttggaatct 31499000  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 200 - 298
Target Start/End: Original strand, 31504032 - 31504130
Alignment:
Q  200 ttaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaaatttttggaatct 298  Q
    ||||| |||| ||||||  ||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||||||||| | |||||||||    
T  31504032 ttaaacttagggggaaataattttgtgacagtacctagcctgagggagctttccaaacttgtatatttaaacttggagcattgcaaactgttggaatct 31504130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 171 - 282
Target Start/End: Complemental strand, 31148486 - 31148375
Alignment:
Q  171 caattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaa 270  Q
    |||||| | |||||| ||||||||||||||||||| ||| ||||||| ||||||||||  |||||||||| |||||||| |||| ||||| |||||| ||    
T  31148486 caattggacgtttacgttggctagaaagattaaatctagggggaaacaattttgtgacggtacctagccttaggaagctatccagacttgcatatttaaa 31148387  T
Q  271 tttggagcattg 282  Q
     ||| |||||||    
T  31148386 cttgcagcattg 31148375  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 285
Target Start/End: Original strand, 31478818 - 31478932
Alignment:
Q  171 caattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaa 270  Q
    |||||| |||| || ||||| |||||  ||||||||||| ||||||| ||||||||||| ||||||| |||||| ||||||| |||||||||||||| |     
T  31478818 caattggatgtctatattggttagaagcattaaatttagggggaaacaattttgtgacagtacctagtctgagggagctttcaaaacttgtatatttaag 31478917  T
Q  271 tttggagcattgcaa 285  Q
     || |||||||||||    
T  31478918 cttagagcattgcaa 31478932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 31472411 - 31472459
Alignment:
Q  219 attttgtgacattacctagcctgaggaagctttccaaacttgtatattt 267  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  31472411 attttgtgacagtacctagcccgagggagctttccaaacttgtatattt 31472459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 31526574 - 31526524
Alignment:
Q  187 ttggctagaaagattaaatttagcgggaaacgattttgtgacattacctag 237  Q
    |||| |||||||||||||||||| ||||||| ||||||||||||| |||||    
T  31526574 ttggttagaaagattaaatttagggggaaacaattttgtgacattgcctag 31526524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 31491627 - 31491725
Alignment:
Q  187 ttggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaa 285  Q
    |||| |||||||| ||||||||  ||||||| ||||||| ||||| ||||||||  || | | ||| | ||||| ||| || |||||||||||||||||    
T  31491627 ttggttagaaagactaaatttaaggggaaacaattttgtcacattgcctagcctccgggatcattctagacttgaatacttaaatttggagcattgcaa 31491725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 6785236 - 6785326
Alignment:
Q  195 aaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattttaatttggagcattgcaa 285  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||||||| | ||||||||||||| |||||||| || ||||| || |||||    
T  6785236 aaagattaaatttagggggaaaccattttgtgacattgcctagcctgaaggagctttccaaactcgtatatttaaacttggatcactgcaa 6785326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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