View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_high_39 (Length: 255)
Name: NF20808_high_39
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 40665672 - 40665605
Alignment:
| Q |
15 |
acatcatcataaccaacttcatcaagtctttcttcatcctctcttttcacaggttccccctcacagaa |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40665672 |
acatcatcataaccaacttcatcaagtctttcttcatcatctcttttcacaggttccccctcacagaa |
40665605 |
T |
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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 40724382 - 40724449
Alignment:
| Q |
15 |
acatcatcataaccaacttcatcaagtctttcttcatcctctcttttcacaggttccccctcacagaa |
82 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
40724382 |
acatcatcataaccgacttcatcaagcctttcttcatcctctcttttcacgggttccccctcgcagaa |
40724449 |
T |
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