View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20808_high_45 (Length: 245)
Name: NF20808_high_45
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_high_45 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 48596371 - 48596150
Alignment:
| Q |
18 |
gggaggtgtataatgatctagcagtagcagcatatgatgagtagtgatagtgatgattgggaggaagatagaaaggcagtgannnnnnnnnnnnnnnnnn |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48596371 |
gggaggtgtataatgatctagcagtagcagcatatgatgagtagtgatagtgatgattgggaggaagatagaaaggcagtgaaggaggaggaggagga-- |
48596274 |
T |
|
| Q |
118 |
nnnntattgagggatgaggtactggtggtgatgatgagagtactgagaatgagcccttggcctccaatctatgtacaacctgtgtctgtgcaattcagca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48596273 |
----tattgagggatgaggtactggtggtgatgatgagagtactgagaatgagcccttggcctccaatctatgtacaacctgtgtctgtgcaattcagca |
48596178 |
T |
|
| Q |
218 |
cgtccacggtggaatgatacaatgtcac |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
48596177 |
cgtccacggtggaatgatacaatgtcac |
48596150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University