View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20808_high_46 (Length: 242)

Name: NF20808_high_46
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20808_high_46
NF20808_high_46
[»] chr6 (14 HSPs)
chr6 (1-223)||(33057273-33057495)
chr6 (69-206)||(33644699-33644836)
chr6 (54-190)||(33285322-33285458)
chr6 (50-187)||(33262357-33262494)
chr6 (54-197)||(33387875-33388018)
chr6 (54-188)||(33304214-33304348)
chr6 (54-190)||(9166489-9166625)
chr6 (64-187)||(28870323-28870446)
chr6 (69-195)||(31562983-31563109)
chr6 (69-131)||(33271582-33271644)
chr6 (57-162)||(33398828-33398933)
chr6 (136-195)||(33358656-33358715)
chr6 (56-187)||(33409709-33409840)
chr6 (55-96)||(33358714-33358755)
[»] scaffold1408 (1 HSPs)
scaffold1408 (49-195)||(367-513)
[»] scaffold0428 (1 HSPs)
scaffold0428 (49-195)||(6113-6259)
[»] chr2 (1 HSPs)
chr2 (54-195)||(17441012-17441147)
[»] chr4 (5 HSPs)
chr4 (54-195)||(31499199-31499340)
chr4 (55-187)||(31472695-31472827)
chr4 (56-187)||(31479154-31479285)
chr4 (54-107)||(31148108-31148161)
chr4 (59-190)||(31156951-31157082)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33057495 - 33057273
Alignment:
Q  1 acacttttatggatgaaacaattcattaaggcaaacccacgttactcttatgagattcaaatagttaatccaggaagtgaaataccaagttggatcaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33057495 acacttttatggatgaaacaattcattaaggcaaacccacgttcctcttctgagattcaaatagttaatccaggaagtgaaataccaagttggatcaaca 33057396  T
Q  101 atcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaataatatcattggtattgtatgttgtgcagcatttacgac 200  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33057395 atcagaggatgggttattcaatagcaatagaccgatctcctattaggcatgacaatgacaataatatcattggtattgtatgttgtgcagcatttacgat 33057296  T
Q  201 ggcaccctatcgtgaaagttttt 223  Q
    ||||||||||||||||| |||||    
T  33057295 ggcaccctatcgtgaaatttttt 33057273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 69 - 206
Target Start/End: Original strand, 33644699 - 33644836
Alignment:
Q  69 tccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaataatatc 168  Q
    |||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| |||||||   |||||||||| |||||||||| |||||||||||    
T  33644699 tccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggttattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatc 33644798  T
Q  169 attggtattgtatgttgtgcagcatttacgacggcacc 206  Q
    |||||  ||||||||||||||| |||||| | ||||||    
T  33644799 attggatttgtatgttgtgcagtatttaccatggcacc 33644836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 33285458 - 33285322
Alignment:
Q  54 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgac 153  Q
    |||||| || |||| ||||||||||||||||||||||||||| || ||||||||  |||||  |||||||||||||||| | |||||||||| |||||||    
T  33285458 gattcatattgttactccaggaagtgaaataccaagttggattaataatcagagcgtgggtagttcaataccaatagacagatctcctattatgcatgac 33285359  T
Q  154 aatgacaataatatcattggtattgtatgttgtgcag 190  Q
    ||| ||||||||||||||||  |||||||||||||||    
T  33285358 aataacaataatatcattggctttgtatgttgtgcag 33285322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 50 - 187
Target Start/End: Complemental strand, 33262494 - 33262357
Alignment:
Q  50 atgagattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggca 149  Q
    ||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||   ||||||||| |||    
T  33262494 atgagtttcaaattgttagtccaggaaatgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgca 33262395  T
Q  150 tgacaatgacaataatatcattggtattgtatgttgtg 187  Q
    ||| ||| ||||||||||||||||  || |||||||||    
T  33262394 tgataataacaataatatcattggctttctatgttgtg 33262357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 33388018 - 33387875
Alignment:
Q  54 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgac 153  Q
    ||||||||| |||| | |||||||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||   |  ||||||| |||||||    
T  33388018 gattcaaattgttactacaggaagtgaaataccgagttggatcaacaatcagagcatgggtgattcaatactaatagacaaattgcctattatgcatgac 33387919  T
Q  154 aatgacaataatatcattggtattgtatgttgtgcagcatttac 197  Q
    ||| ||||||||||||||||  || |||||||||||| ||||||    
T  33387918 aataacaataatatcattggctttctatgttgtgcagtatttac 33387875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 188
Target Start/End: Complemental strand, 33304348 - 33304214
Alignment:
Q  54 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgac 153  Q
    ||||||||| |||| |||||||| ||||||||||| ||||||||||||| ||||  ||||| ||||||||| ||||||||| |||||||||| |||||||    
T  33304348 gattcaaattgttactccaggaaatgaaataccaatttggatcaacaataagagcgtgggtgattcaatacaaatagaccgatctcctattatgcatgac 33304249  T
Q  154 aatgacaataatatcattggtattgtatgttgtgc 188  Q
    ||| ||||| ||||||||||  || ||||||||||    
T  33304248 aataacaattatatcattggctttctatgttgtgc 33304214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 9166625 - 9166489
Alignment:
Q  54 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgac 153  Q
    ||||||||| ||||  ||||||| |||||||||||||||||||||||||| |||  ||| |  ||| |||||||||||||   ||||||||| |||||||    
T  9166625 gattcaaattgttacgccaggaattgaaataccaagttggatcaacaatcggagcgtggatggttcgataccaatagacctaactcctattatgcatgac 9166526  T
Q  154 aatgacaataatatcattggtattgtatgttgtgcag 190  Q
    ||| ||||||||||||||||  |||||||||||||||    
T  9166525 aataacaataatatcattggctttgtatgttgtgcag 9166489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 28870323 - 28870446
Alignment:
Q  64 gttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaata 163  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| ||||||  |||||||| |||||||   ||||||||||   |||||||| ||||||    
T  28870323 gttactccaggaagtgaaataccaagttggattaacaatcagagcatgggtggttcaatacaaatagacgaatctcctattataaatgacaataacaata 28870422  T
Q  164 atatcattggtattgtatgttgtg 187  Q
    ||||||||||  ||||||||||||    
T  28870423 atatcattggctttgtatgttgtg 28870446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 195
Target Start/End: Original strand, 31562983 - 31563109
Alignment:
Q  69 tccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaataatatc 168  Q
    |||||||||||||||||| | ||||||||||||||| || |||||| ||||||||||||||||    ||||||  || ||||||||||  |||| |||||    
T  31562983 tccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatatc 31563082  T
Q  169 attggtattgtatgttgtgcagcattt 195  Q
    |||||  ||||||||||||||| ||||    
T  31563083 attggctttgtatgttgtgcagtattt 31563109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 33271644 - 33271582
Alignment:
Q  69 tccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaataga 131  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||    
T  33271644 tccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcgataccaataga 33271582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 33398933 - 33398828
Alignment:
Q  57 tcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaat 156  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||| |  ||||| ||||||||| ||||||||  ||||||  || |||||| |||    
T  33398933 tcaaattgttattccaggaagtgaaataccaagttggatcaacaatcagtgtgtgggtgattcaatacaaatagacctatctcctgctatgcatgataat 33398834  T
Q  157 gacaat 162  Q
     |||||    
T  33398833 aacaat 33398828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 33358715 - 33358656
Alignment:
Q  136 tctcctattaggcatgacaatgacaataatatcattggtattgtatgttgtgcagcattt 195  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||    
T  33358715 tctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattt 33358656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 33409840 - 33409709
Alignment:
Q  56 ttcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaa 155  Q
    ||||||| || | |||||||||||||||||||||||||||||||||||||||  |||||  ||||||| |||| ||    |||||| |||   |||||||    
T  33409840 ttcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcagagcgtgggtgcttcaatatcaattgatgaatctcctgttataaatgacaa 33409741  T
Q  156 tgacaataatatcattggtattgtatgttgtg 187  Q
    | |||||||||| |||||  ||||| ||||||    
T  33409740 taacaataatattattggctttgtaagttgtg 33409709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 33358755 - 33358714
Alignment:
Q  55 attcaaatagttaatccaggaagtgaaataccaagttggatc 96  Q
    ||||||||||||| ||||||||||||||| | ||||||||||    
T  33358755 attcaaatagttactccaggaagtgaaatgctaagttggatc 33358714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 195
Target Start/End: Complemental strand, 513 - 367
Alignment:
Q  49 tatgagattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggc 148  Q
    |||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||  |||||||| |||||||   |||||| |||  |    
T  513 tatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctgttatac 414  T
Q  149 atgacaatgacaataatatcattggtattgtatgttgtgcagcattt 195  Q
    |||||||| | ||||||||||||||  |||||| |||||||| ||||    
T  413 atgacaataagaataatatcattggctttgtattttgtgcagtattt 367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 195
Target Start/End: Complemental strand, 6259 - 6113
Alignment:
Q  49 tatgagattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggc 148  Q
    |||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||  |||||||| |||||||   |||||| |||  |    
T  6259 tatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctgttatac 6160  T
Q  149 atgacaatgacaataatatcattggtattgtatgttgtgcagcattt 195  Q
    |||||||| | ||||||||||||||  |||||| |||||||| ||||    
T  6159 atgacaataagaataatatcattggctttgtattttgtgcagtattt 6113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 17441012 - 17441147
Alignment:
Q  54 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgac 153  Q
    |||||| || |||| ||||||||| |||||||||||||||||||||||| ||||  ||||| ||||||||  ||||||||  |||||||||| ||         
T  17441012 gattcatattgttagtccaggaagcgaaataccaagttggatcaacaataagagcgtgggtgattcaataagaatagaccaatctcctattaagc----- 17441106  T
Q  154 aatgacaataatatcattggtattgtatgttgtgcagcattt 195  Q
     |||||||||||||||||||| ||||||||||||||| ||||    
T  17441107 -atgacaataatatcattggttttgtatgttgtgcagtattt 17441147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 31499199 - 31499340
Alignment:
Q  54 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgac 153  Q
    |||||| || |||| |||||||||||||||| |||||||| | || |||||||| | |||| ||||||||| |||||||   ||||| ||||  ||||||    
T  31499199 gattcatattgttactccaggaagtgaaatatcaagttggtttaagaatcagagcaagggtgattcaatacgaatagactcatctcccattatccatgac 31499298  T
Q  154 aatgacaataatatcattggtattgtatgttgtgcagcattt 195  Q
    ||| ||||||||||||||||  ||||||||||||||| ||||    
T  31499299 aataacaataatatcattggctttgtatgttgtgcagtattt 31499340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 31472695 - 31472827
Alignment:
Q  55 attcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgaca 154  Q
    ||||| || |||| ||||||||||||||||||||||||| ||||||||||||  | |||| |||| |||| | |||||   ||||| |||| ||||||||    
T  31472695 attcagattgttactccaggaagtgaaataccaagttggttcaacaatcagaacaagggtgattcgatacgattagactcatctcccattatgcatgaca 31472794  T
Q  155 atgacaataatatcattggtattgtatgttgtg 187  Q
    || |||||||||||||||||  | |||||||||    
T  31472795 ataacaataatatcattggttgtatatgttgtg 31472827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 31479154 - 31479285
Alignment:
Q  56 ttcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaa 155  Q
    ||||||| |||| |||||| |||||||| ||||||||| ||||||||||||| | |||| ||| ||||| ||||||    ||||| |||| ||| |||||    
T  31479154 ttcaaattgttactccaggtagtgaaatgccaagttggttcaacaatcagagcaagggtaatttaatacgaatagattcttctccgattatgcacgacaa 31479253  T
Q  156 tgacaataatatcattggtattgtatgttgtg 187  Q
    | ||||||||||| ||||   |||||||||||    
T  31479254 taacaataatatcgttggctgtgtatgttgtg 31479285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 31148161 - 31148108
Alignment:
Q  54 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagag 107  Q
    ||||||||| |||| ||| ||||||||||||||||||||| |||||||||||||    
T  31148161 gattcaaattgttactccgggaagtgaaataccaagttggttcaacaatcagag 31148108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 190
Target Start/End: Complemental strand, 31157082 - 31156951
Alignment:
Q  59 aaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatga 158  Q
    |||| |||| ||| |||||||||||||||| |||| |||||||||||||   |||| ||||||||  ||| ||||  ||||  |||| | |  |||||||    
T  31157082 aaattgttattcctggaagtgaaataccaatttggttcaacaatcagagcgagggtgattcaataagaatggacctatctcagattatggacaacaatga 31156983  T
Q  159 caataatatcattggtattgtatgttgtgcag 190  Q
    |||| || ||||||| ||||  ||||||||||    
T  31156982 caatgatttcattggcattgcttgttgtgcag 31156951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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