View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_high_51 (Length: 237)
Name: NF20808_high_51
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 48730734 - 48730612
Alignment:
| Q |
99 |
accaacttgccacttagtagtcctcctacagcaacatgtcgtattccaagggcgatagaatttgacttgtaatgcaaaaaacatgtccagtcaaatattg |
198 |
Q |
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| T |
48730734 |
accaacttgccacttagtagtcctcctacagcaacatgtcgtattccaagggcgattgaatttgacttgtaatgcaaaaaacatgtccagtcaaacattg |
48730635 |
T |
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| Q |
199 |
actttcaaattagaagaacaaca |
221 |
Q |
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| T |
48730634 |
actttcaaattagaagaacaaca |
48730612 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 48730824 - 48730753
Alignment:
| Q |
1 |
atgaattggtaattgataggaggtttcccatttcataaaaattgaccggagccaacaaactaaagaacattc |
72 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48730824 |
atgaattggtaattgatacgaggtttcccatttcataaaaattgaccggagccaacaaactaaagaacattc |
48730753 |
T |
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