View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_10 (Length: 486)
Name: NF20808_low_10
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_10 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 486
Target Start/End: Original strand, 29412463 - 29412930
Alignment:
| Q |
20 |
gtcacagcaccaatgtctgtttcactggggaaagaagtgtattttgcagggctatgatatatattttcctctttttcagtcaaaccaaaatctggtagag |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29412463 |
gtcacagcaccaatgtctgtttcactggggaaagaagtgtattttgcagggctatgatatatactttcctctttttcagtcaaaccaaaatctggtagag |
29412562 |
T |
|
| Q |
120 |
ttgtaccttcctcaaactgttttccatgaatagataatctgttgattttctcatcataatatttcatatcctcaaactccctttgacacatccaatcctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29412563 |
ttgtaccttcctcaaactgttttccatgaatagataatctgttgattttctcatcataatatttcatatcctcaaactcc-tttgacacatccaatcctt |
29412661 |
T |
|
| Q |
220 |
ctaatgtcaagttttcttcatcctttccactaggcttggctgcttcttcataagtctcttcaaaggcaacacctttgtctccggattcattctgaatctc |
319 |
Q |
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| T |
29412662 |
ctaatgtcaagttttcttcatcctttccactaggcttggatgcttcttcataagtctcttcaaaggcaacacctttgtctccggattcattctgaatctc |
29412761 |
T |
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| Q |
320 |
actatagtccatttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagtgttcgatgtctcagcttcatttatt |
419 |
Q |
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| T |
29412762 |
actatagtccttttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagcgttcgatgtctcagcttcatttatt |
29412861 |
T |
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| Q |
420 |
gcgtatgcatcttccttgtcatcatccttcaattcatc-tcac-tcgaccaggagcagctgcataagtt |
486 |
Q |
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| T |
29412862 |
gcgtatgcatcttccttgtcatcatccttcaactcaacttcacgtggaccaggagcagctgcataagtt |
29412930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 20 - 486
Target Start/End: Complemental strand, 10161717 - 10161249
Alignment:
| Q |
20 |
gtcacagcaccaatgtctgtttcactggggaaagaagtgtattttgcagggctatgatatatattttcctctttttcagtcaaaccaaaatctggtagag |
119 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10161717 |
gtcacaacaccaatgtctgtttcactggggaaagaagtgtattttgcagggctatgatatatactttcctctttttcagtcaaaccaaaatctggtagag |
10161618 |
T |
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| Q |
120 |
ttgtaccttcctcaaactgttttccatgaatagataatctgttgattttctcatcataatatttcatatcctcaaactccctttgacacatccaatcctt |
219 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10161617 |
ttgtaccttcctcaaactattttccatgaatagataatctgttgattttctcatcataatatttcatatcctcaaactccctttgacacatccaatcctt |
10161518 |
T |
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| Q |
220 |
ctaatgtcaagttttcttcatcctttccactaggcttggctgcttcttcataagtctcttcaaaggcaacacctttgtctccggattcattctgaatctc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10161517 |
ctaatgtcaagttttcttcatcctttccactaggcttggctgcttcttcataagtctcttcaaaggcaacacctttgtctccggattcattatgaatctc |
10161418 |
T |
|
| Q |
320 |
actatagtccatttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagtgttcgatgtctcagcttcatttatt |
419 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10161417 |
actatagtctgtttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagcgttcgatgtctcagcttcatttatt |
10161318 |
T |
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| Q |
420 |
gcgtatgcatcttccttgtcatcatccttcaattcatc-tcac-tcgaccaggagcagctgcataagtt |
486 |
Q |
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|||||||||||||||||||||||||||||||| ||| | |||| | ||||||||| ||||||||||||| |
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| T |
10161317 |
gcgtatgcatcttccttgtcatcatccttcaactcaacttcacgtggaccaggagtagctgcataagtt |
10161249 |
T |
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