View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_12 (Length: 450)
Name: NF20808_low_12
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 10 - 433
Target Start/End: Original strand, 31935817 - 31936240
Alignment:
| Q |
10 |
attatactacaaatagataccatataagaaatttcatataaaacgacacaacacaaccatgatgatagatacaagatccatgtgaatctgataaattgat |
109 |
Q |
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| T |
31935817 |
attatactacaaatagataccatataagaaatttcatataaaacgacacaacacaaccatgatgatagatacaagatccatgtgaatctgataaattgat |
31935916 |
T |
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| Q |
110 |
aggataaaataattaagaggtgaacttgtaggctattaaaattgtgagtcccaaattggcaaagaaagccaaatatgaaagcaaaagtgaaatcaaattg |
209 |
Q |
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| T |
31935917 |
aggataaaataattaagaggtgaacttgtaggctattaaaattgtgagtcccaaattggcaaagaaagccaaatatgaaagcaaaagtgaaatcaaattg |
31936016 |
T |
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| Q |
210 |
gttttgcagaacttttgcacatggtcacagattgcagtccatccaacgtgtttctctccatactgtcccacgtatccaacggctgtggctgctgaacatc |
309 |
Q |
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| T |
31936017 |
gttttgcagaacttttgcacatggtcacagattgcagtccatccaacgtgtttctctccatactgtcccacgtatccaacggctgtggctgctgaacatc |
31936116 |
T |
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| Q |
310 |
cagctatcagcaataccgtcatcacctgatcaaaattcaccaaattttcataacaaacatgccataatagaaattagaaagaaagaaaaaccgtgattat |
409 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31936117 |
cagctatcagcaacaccgtcatcacctgatcaaaattcaccaatttttcataacaaacatgccataatagaaattagaaagaaagaaaaaccgtgattat |
31936216 |
T |
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| Q |
410 |
gttgtttgggttttgctaatagtg |
433 |
Q |
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| T |
31936217 |
gttgtttgggttttgctaatagtg |
31936240 |
T |
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