View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_13 (Length: 434)
Name: NF20808_low_13
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 5 - 420
Target Start/End: Complemental strand, 30888677 - 30888253
Alignment:
| Q |
5 |
gcgcacacacacctgcaatggttgaactatcccatcccaccaacaaattcccaagtgtagcagcagttgcaatcataacaatttccctcatgattgttct |
104 |
Q |
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| T |
30888677 |
gcgcacacacacctgcaatggttgaactatcccatcccaccaacaaattcccaagtgtagcagcagttgcaatcataacaatttccctcatgattgttct |
30888578 |
T |
|
| Q |
105 |
tggttaataacatagaaaaattaaccaaaccaagaacatactttagattacttgtatatatgttctcaaacaaaacacttagaactattagttagctctg |
204 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30888577 |
tggctaataacatagaaaaattaaccaaaccaagaacatactttagattacttgtatatatgttctcaaacaaaacacttagaactattagttagctctg |
30888478 |
T |
|
| Q |
205 |
catcactgtgttccaaatccaataccatgcttaattagaacacctttcgattaaaatgtgcaaattttagttaacttgtttcatattgttcggcatacat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30888477 |
catcactgtgttccaaatccaataccatgcttaattagaacacctttcgattaaaatgtgcaaattttagttaacttgtttcatattgttcggcatacat |
30888378 |
T |
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| Q |
305 |
taatgtgtcctaagtttttgttc---------ttcaattcatatgtcacatatctattgtctggcaatgaagttgtaaaggtagatttttgttcagttga |
395 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
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| T |
30888377 |
taatgtgtcctaagtttttgttcttcatgttattcaattcatatgtcacatatctattgtctggcaatgaagttgttaaagtggatttttgttcagttga |
30888278 |
T |
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| Q |
396 |
ttaattgaagatcaaaagaagaatg |
420 |
Q |
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|||||||| |||||||||||||||| |
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| T |
30888277 |
ttaattgacgatcaaaagaagaatg |
30888253 |
T |
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