View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_14 (Length: 433)
Name: NF20808_low_14
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Original strand, 21492162 - 21492567
Alignment:
| Q |
13 |
aaaataagaacttaacattctctggggtgatttcaatggctagtgacattgatataaggaaaaggcctacaattgaggttgcttttaaagacttgacact |
112 |
Q |
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| T |
21492162 |
aaaataagaacttaacattctctggggtgatttcaatggctagtgacattgatataaggaaaaggcctacaattgaggttgcttttaaagacttgacact |
21492261 |
T |
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| Q |
113 |
cactttgaaagggaaaaacaaacatctattaagatgtgtgaccggtaagttacatcccggtcgagtttctgcagtcatgggaccatctggggctggtaag |
212 |
Q |
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| T |
21492262 |
cactttgaaagggaaaaacaaacatctattaagatgtgtgaccggtaagttacatcccggtcgagtttctgcagtcatgggaccatctggggctggtaag |
21492361 |
T |
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| Q |
213 |
acaacatttctttctgctttaactggaaaagcagctggttgctacacaactggtcaagttcttgtaaatggtcaggaatcatctattcgatccttcaaga |
312 |
Q |
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| T |
21492362 |
acaacatttctttctgctttaactggaaaagcagctggttgctacacaactggtcaagttcttgtaaatggtcaggaatcatctattcgatccttcaaga |
21492461 |
T |
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| Q |
313 |
ggatcattggctttgttccacaagatgatattgtccatggcaatttgacagtggaggagaatctatggtttagtgccagatgcaggtatgccacattgaa |
412 |
Q |
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| T |
21492462 |
ggatcattggctttgttccacaagatgatattgtccatggcaatttgacagtggaggagaatctatggtttagtgccagatgcaggtatgccacagtgaa |
21492561 |
T |
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| Q |
413 |
atccat |
418 |
Q |
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| T |
21492562 |
atccat |
21492567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 41043123 - 41043049
Alignment:
| Q |
171 |
ggtcgagtttctgcagtcatgggaccatctggggctggtaagacaacatttctttctgctttaactggaaaagca |
245 |
Q |
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| T |
41043123 |
ggtcgagtttctgctgttatgggaccctcaggagctggaaaaaccacatttctttcagctttggctggaaaagca |
41043049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 41042970 - 41042893
Alignment:
| Q |
324 |
tttgttccacaagatgatattgtccatggcaatttgacagtggaggagaatctatggtttagtgccagatgcaggtat |
401 |
Q |
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| T |
41042970 |
tttgtgccacaggatgatattgtacatggaaacttgacagtagaggaaaatctccgttttagcgcaagatgcaggtat |
41042893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 400
Target Start/End: Original strand, 28087462 - 28087532
Alignment:
| Q |
330 |
ccacaagatgatattgtccatggcaatttgacagtggaggagaatctatggtttagtgccagatgcaggta |
400 |
Q |
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| T |
28087462 |
ccacaagatgatattgtgcatgggaacttgacggtggaggaaaatcttcgtttcagtgcaagatgcaggta |
28087532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 42553758 - 42553816
Alignment:
| Q |
187 |
tcatgggaccatctggggctggtaagacaacatttctttctgctttaactggaaaagca |
245 |
Q |
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| T |
42553758 |
tcatgggcccgtcaggggctggcaagacaacatttctttcagctctagctggaaaagca |
42553816 |
T |
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