View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_15 (Length: 426)
Name: NF20808_low_15
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 116 - 409
Target Start/End: Original strand, 2505820 - 2506115
Alignment:
| Q |
116 |
tattattagacattcctactaaataagctatatatcttcaactttgtgtggttcttattcttaattaggcactcctactaaataagctatatatttttaa |
215 |
Q |
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| T |
2505820 |
tattattagacattcctactaaataagctatatatcttcaactttgtgtggttcttattcttaattaggcactcctactaaataagctatatatttttaa |
2505919 |
T |
|
| Q |
216 |
ctttttgttgttcttgggaaatgatttgtctggcatgaattttttctccagtgaactaatctcaaccattcattcattttaatgatagctgagctcatct |
315 |
Q |
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| T |
2505920 |
ctttttgtggttcttgggaaatga-ttgtctggcatgaattttttctcctgtgaactaatctcaacaattcattcattttaatgatagctgagctcatct |
2506018 |
T |
|
| Q |
316 |
caacccttcattcatta--atta-nnnnnnnnngacaagttcattcatcttgtatggtaccgtggtcaaccatcgcagagcaatcctcaaccgaacc |
409 |
Q |
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| T |
2506019 |
caacccttcattcattattattattattttttttacaagttcattcatcttgtatggtaccgtggtcaaccatcgcagagcaatcctcaaccgaacc |
2506115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 2505760 - 2505640
Alignment:
| Q |
1 |
ttgcacttgcacctgctaagacatacacactaataagttgacattgttgctaatgtcaaaaacatatgacacagtgacactgacaataaaacatattaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2505760 |
ttgcacttgcacctgctaagacatacacactaataagttgacattgttgctaatgtcaaaaacatatgacacagtgacactgacaataaaacatattaat |
2505661 |
T |
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| Q |
101 |
gtataattattagattattat |
121 |
Q |
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| T |
2505660 |
gtataattattagattattat |
2505640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 257 - 329
Target Start/End: Original strand, 8681912 - 8681984
Alignment:
| Q |
257 |
ttttctccagtgaactaatctcaaccattcattcattttaatgatagctgagctcatctcaacccttcattca |
329 |
Q |
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| T |
8681912 |
ttttctcctgcgaactaatctcaaccattcattccttttaatgacagttgagctcatctcaaccctccattca |
8681984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 30916398 - 30916473
Alignment:
| Q |
256 |
tttttctccagtgaactaatctcaaccattcattcattttaatgatagctgagctcatctcaacccttcattcatt |
331 |
Q |
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| T |
30916398 |
tttttctcctgtgagctaatctcaaccattcatttcttttaatgacagcttaactcatctcaacccttcattcatt |
30916473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 7361274 - 7361332
Alignment:
| Q |
269 |
aactaatctcaaccattcattcattttaatgatagctgagctcatctcaacccttcatt |
327 |
Q |
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| T |
7361274 |
aactaatctcaaccattcattccttttaatgacagttgagctcatctcaacccttcatt |
7361332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 331
Target Start/End: Complemental strand, 7362091 - 7362022
Alignment:
| Q |
257 |
ttttctccagtgaactaatctcaaccattcattcattttaatgatagctgagctcatctcaacccttcattcatt |
331 |
Q |
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|||||||| |||||||||||||| |||||||||| |||||| || ||||||||||| ||||||| ||||||| |
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| T |
7362091 |
ttttctcctgtgaactaatctcagccattcattccttttaa--at---tgagctcatctaaaccctttattcatt |
7362022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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