View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20808_low_17 (Length: 413)

Name: NF20808_low_17
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20808_low_17
NF20808_low_17
[»] chr5 (14 HSPs)
chr5 (17-405)||(29595504-29595892)
chr5 (267-361)||(29594906-29595000)
chr5 (267-305)||(27345929-27345967)
chr5 (53-98)||(12187254-12187299)
chr5 (54-97)||(22294056-22294099)
chr5 (267-306)||(39936255-39936294)
chr5 (267-314)||(40372161-40372208)
chr5 (267-305)||(2029057-2029095)
chr5 (267-305)||(23253496-23253534)
chr5 (267-305)||(23257319-23257357)
chr5 (267-305)||(24565573-24565611)
chr5 (267-305)||(24606609-24606647)
chr5 (267-305)||(39937916-39937954)
chr5 (264-312)||(38129123-38129171)
[»] chr8 (11 HSPs)
chr8 (268-405)||(33321498-33321635)
chr8 (267-361)||(33322157-33322251)
chr8 (267-312)||(16911049-16911094)
chr8 (266-305)||(4402297-4402336)
chr8 (267-305)||(22632978-22633016)
chr8 (267-305)||(26847097-26847135)
chr8 (267-305)||(42094009-42094047)
chr8 (268-305)||(22632323-22632360)
chr8 (53-97)||(20542459-20542503)
chr8 (54-98)||(41726967-41727011)
chr8 (54-98)||(44648936-44648980)
[»] chr7 (16 HSPs)
chr7 (266-386)||(3314954-3315074)
chr7 (266-309)||(30581272-30581315)
chr7 (267-303)||(17114145-17114181)
chr7 (55-98)||(16861748-16861791)
chr7 (266-309)||(41617987-41618030)
chr7 (266-305)||(41965787-41965826)
chr7 (267-314)||(46491689-46491736)
chr7 (267-305)||(767136-767174)
chr7 (267-361)||(3315417-3315511)
chr7 (267-309)||(41358977-41359019)
chr7 (267-305)||(42818563-42818601)
chr7 (267-312)||(34808992-34809037)
chr7 (272-305)||(36611556-36611589)
chr7 (267-303)||(24874590-24874626)
chr7 (267-303)||(41965112-41965148)
chr7 (269-305)||(44876944-44876980)
[»] chr1 (13 HSPs)
chr1 (267-309)||(27746164-27746206)
chr1 (267-368)||(27745556-27745657)
chr1 (271-368)||(32772104-32772201)
chr1 (267-305)||(16449555-16449593)
chr1 (267-305)||(16459129-16459167)
chr1 (267-333)||(24847783-24847849)
chr1 (267-305)||(26240881-26240919)
chr1 (267-312)||(24848429-24848474)
chr1 (267-305)||(26240114-26240152)
chr1 (268-368)||(6942191-6942291)
chr1 (56-100)||(19066929-19066973)
chr1 (56-100)||(19114819-19114863)
chr1 (266-314)||(31116685-31116733)
[»] chr3 (17 HSPs)
chr3 (268-360)||(54308454-54308546)
chr3 (267-312)||(20807937-20807982)
chr3 (267-339)||(18745346-18745418)
chr3 (267-312)||(4706959-4707004)
chr3 (267-312)||(20808610-20808655)
chr3 (261-305)||(47571190-47571234)
chr3 (266-305)||(15287566-15287605)
chr3 (54-97)||(44698290-44698333)
chr3 (267-302)||(49350283-49350318)
chr3 (267-305)||(49349676-49349714)
chr3 (267-309)||(54753577-54753619)
chr3 (268-305)||(9830573-9830610)
chr3 (265-338)||(36540008-36540081)
chr3 (269-302)||(48626127-48626160)
chr3 (54-98)||(4020169-4020213)
chr3 (54-98)||(6785792-6785836)
chr3 (54-98)||(44291228-44291272)
[»] chr4 (12 HSPs)
chr4 (267-309)||(34941502-34941544)
chr4 (267-309)||(51386456-51386498)
chr4 (267-360)||(56226462-56226555)
chr4 (267-305)||(14527586-14527624)
chr4 (57-99)||(16004448-16004490)
chr4 (267-305)||(24666129-24666167)
chr4 (267-305)||(42792775-42792813)
chr4 (266-304)||(52129420-52129458)
chr4 (267-304)||(26354243-26354280)
chr4 (268-312)||(20143280-20143324)
chr4 (267-303)||(25055109-25055145)
chr4 (267-339)||(56227031-56227103)
[»] chr2 (7 HSPs)
chr2 (54-98)||(40574141-40574185)
chr2 (267-309)||(127033-127075)
chr2 (267-305)||(127745-127783)
chr2 (267-305)||(20606931-20606969)
chr2 (272-305)||(44297424-44297457)
chr2 (54-98)||(1004773-1004817)
chr2 (268-312)||(34595937-34595981)
[»] scaffold0627 (1 HSPs)
scaffold0627 (267-305)||(6464-6502)
[»] chr6 (2 HSPs)
chr6 (267-309)||(5312241-5312283)
chr6 (54-100)||(21809804-21809850)
[»] scaffold0068 (1 HSPs)
scaffold0068 (55-100)||(52081-52126)


Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 29595892 - 29595504
Alignment:
Q  17 cttagttggtgtttcattaagtgtgttctagggacgttggttaagaaatctacaaatagaatttttgtcatggaaatataaattagaagaagagaataat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29595892 cttagttggtgtttcattaagtgtgttctagggacgttggttaagaaatctacaaatagaatttttgtcatggaaatataaattagaagaagagaataat 29595793  T
Q  117 gacggagaatctgagtgctatggtccatggatgtttaatttgcaacacaaaaacagaaatggtaggaaagtttccaaaaccaacagtagtgatggtaaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29595792 gacggagaatctgagtgctatggtccatggatgtttaatttgcaacacaaaaacagaaatggtaggaaagtttccaaaaccaacagtagtgatggtaaaa 29595693  T
Q  217 gaagactagtaaaaaggccagaataattagtttcctacatataacaaaggggtggattctagcgtgagggttcaattaagtccctcaccagtgtactagt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29595692 gaagactagtaaaaaggccagaataattagtttcctacatataacaaaggggtggattctagcgtgagggttcaattaagtccctcaccagtgtaccagt 29595593  T
Q  317 ttatttgaccattagattaaatatgactataagatctcattatttataaccatactagataaaatatcctataactagtagttcttttc 405  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29595592 ttatttgaccattagattaaataagactataagatctcattatttataaccatactagataaaatatcctataactagtagttcttttc 29595504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 29594906 - 29595000
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtactagtttatttgaccattagattaaatatgactataagatctcattattt 361  Q
    |||||||||||| |||||||||||||||||| | |||||  ||||| | ||||||||  |||| ||||||||| ||| ||| || ||||||||||    
T  29594906 ggtggattctagggtgagggttcaattaagttcttcaccgatgtaccactttatttggtcattggattaaataagaccatatgaactcattattt 29595000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 27345967 - 27345929
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  27345967 ggtggattctagggtgagggttcaattaagtccctcacc 27345929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 12187299 - 12187254
Alignment:
Q  53 ttggttaagaaatctacaaatagaatttttgtcatggaaatataaa 98  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||||    
T  12187299 ttggttaaagaatctacaaatagaatttttgtcttggaaatataaa 12187254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 22294099 - 22294056
Alignment:
Q  54 tggttaagaaatctacaaatagaatttttgtcatggaaatataa 97  Q
    |||||||| ||||||||||||||| ||||||| |||||||||||    
T  22294099 tggttaaggaatctacaaatagaaattttgtcttggaaatataa 22294056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 306
Target Start/End: Original strand, 39936255 - 39936294
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacca 306  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  39936255 ggtggattctaaggtgagggttcaattaagtccctcacca 39936294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 40372208 - 40372161
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtacta 314  Q
    |||||||||||| |||||||||||||||||| ||||||| ||| ||||    
T  40372208 ggtggattctagggtgagggttcaattaagttcctcaccggtggacta 40372161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 2029095 - 2029057
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  2029095 ggtggattctagggtgagggctcaattaagtccctcacc 2029057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 23253534 - 23253496
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  23253534 ggtggattctagggtgagggtccaattaagtccctcacc 23253496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 23257319 - 23257357
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  23257319 ggtggattctagagtgagggtccaattaagtccctcacc 23257357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 24565573 - 24565611
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcacc 24565611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 24606609 - 24606647
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcacc 24606647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 39937954 - 39937916
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  39937954 ggtggattctagggtgagggttcagttaagtccctcacc 39937916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 38129123 - 38129171
Alignment:
Q  264 aggggtggattctagcgtgagggttcaattaagtccctcaccagtgtac 312  Q
    ||||||||||||||  |||||||  ||||||||||||||||| ||||||    
T  38129123 aggggtggattctaaggtgagggagcaattaagtccctcaccggtgtac 38129171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 268 - 405
Target Start/End: Original strand, 33321498 - 33321635
Alignment:
Q  268 gtggattctagcgtgagggttcaattaagtccctcaccagtgtactagtttatttgaccattagattaaatatgactataagatctcattatttataacc 367  Q
    ||||||||||  |||| ||||||||||||||||||||   ||||| | |||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  33321498 gtggattctaaggtgatggttcaattaagtccctcactgatgtaccaatttatttgaccattggattaaataagactataagatctcattatttataacc 33321597  T
Q  368 atactagataaaatatcctataactagtagttcttttc 405  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  33321598 atactagataaaatctcctctaactagtagttcttttc 33321635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 33322251 - 33322157
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtactagtttatttgaccattagattaaatatgactataagatctcattattt 361  Q
    ||||||||||||  ||||||||||||||  ||||||||  |||||| | |||||||||||||| ||||||||| ||  ||| || ||||||||||    
T  33322251 ggtggattctaggatgagggttcaattatatccctcacatgtgtacaactttatttgaccattggattaaataagaacatatgaactcattattt 33322157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 16911094 - 16911049
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtac 312  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||||    
T  16911094 ggtggattctagggtgagggctcaattaagtccctcaccggtgtac 16911049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 305
Target Start/End: Complemental strand, 4402336 - 4402297
Alignment:
Q  266 gggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  4402336 gggtggattctagggtgagggttctattaagtccctcacc 4402297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 22633016 - 22632978
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  22633016 ggtggattctagggtgagggatcaattaagtccctcacc 22632978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 26847097 - 26847135
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  26847097 ggtggattctagggtgagggtccaattaagtccctcacc 26847135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 42094009 - 42094047
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  42094009 ggtggattctagggtgagggatcaattaagtccctcacc 42094047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 22632323 - 22632360
Alignment:
Q  268 gtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  22632323 gtggattctagggtgagggatcaattaagtccctcacc 22632360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 20542503 - 20542459
Alignment:
Q  53 ttggttaagaaatctacaaatagaatttttgtcatggaaatataa 97  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||||||    
T  20542503 ttggttaaggaatctacaaatagaaatttcgtcttggaaatataa 20542459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 41727011 - 41726967
Alignment:
Q  54 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 98  Q
    |||||||| |||||||||||| || ||||||| ||||||||||||    
T  41727011 tggttaaggaatctacaaataaaaattttgtcttggaaatataaa 41726967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 44648936 - 44648980
Alignment:
Q  54 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 98  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||    
T  44648936 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaa 44648980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 386
Target Start/End: Original strand, 3314954 - 3315074
Alignment:
Q  266 gggtggattctagcgtgagggttcaattaagtccctcaccagtgtactagtttatttgaccattagattaaatatgactataagatctcattatttataa 365  Q
    ||||||||||||  |||||||||||||||||||||||||| |||||| | ||||||| |||||| ||||||||   || |||  ||||||||||||||||    
T  3314954 gggtggattctacggtgagggttcaattaagtccctcaccggtgtaccactttatttaaccattggattaaatgaaaccatactatctcattatttataa 3315053  T
Q  366 ccatactagataaaatatcct 386  Q
    ||| |||  ||||||| ||||    
T  3315054 ccacactgaataaaatctcct 3315074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 30581315 - 30581272
Alignment:
Q  266 gggtggattctagcgtgagggttcaattaagtccctcaccagtg 309  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  30581315 gggtgaattctagggtgagggttcaattaagtccctcaccagtg 30581272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 17114145 - 17114181
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctca 303  Q
    |||||||||||| ||||||||||||||||||||||||    
T  17114145 ggtggattctagggtgagggttcaattaagtccctca 17114181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 16861791 - 16861748
Alignment:
Q  55 ggttaagaaatctacaaatagaatttttgtcatggaaatataaa 98  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||    
T  16861791 ggttaagaaatctataaatagaatttatgtcttggaaatataaa 16861748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 41618030 - 41617987
Alignment:
Q  266 gggtggattctagcgtgagggttcaattaagtccctcaccagtg 309  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||    
T  41618030 gggtggattctagagtgagggtccaattaagtctctcaccagtg 41617987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 305
Target Start/End: Complemental strand, 41965826 - 41965787
Alignment:
Q  266 gggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  41965826 gggtggattctagggtgagggtccaattaagtccctcacc 41965787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 46491736 - 46491689
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtacta 314  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||||    
T  46491736 ggtggattctagggtgagggttcaactaagtccctcaccggtggacta 46491689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 767136 - 767174
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  767136 ggtggattctagggtgagggtccaattaagtccctcacc 767174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 3315511 - 3315417
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtactagtttatttgaccattagattaaatatgactataagatctcattattt 361  Q
    |||||||||||  ||||||| |||||||||||||||||| || ||  | || |||| |||||  ||||||||| ||| ||| || ||||||||||    
T  3315511 ggtggattctaaggtgagggctcaattaagtccctcaccggtataacacttaatttaaccatcggattaaataagaccatatgaactcattattt 3315417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 41359019 - 41358977
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtg 309  Q
    |||||||||||| ||||||| |||||||||||| |||||||||    
T  41359019 ggtggattctagggtgagggatcaattaagtccatcaccagtg 41358977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 42818601 - 42818563
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  42818601 ggtgaattctagggtgagggttcaattaagtccctcacc 42818563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 34809037 - 34808992
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtac 312  Q
    |||||||||||| |||||||||||||||||||| ||| | ||||||    
T  34809037 ggtggattctagagtgagggttcaattaagtccttcatcggtgtac 34808992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 36611556 - 36611589
Alignment:
Q  272 attctagcgtgagggttcaattaagtccctcacc 305  Q
    ||||||| ||||||||||||||||||||||||||    
T  36611556 attctagggtgagggttcaattaagtccctcacc 36611589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 24874626 - 24874590
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctca 303  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  24874626 ggtggattctagggtgagggttcaattaggtccctca 24874590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 41965112 - 41965148
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctca 303  Q
    |||||||||||| |||||||| |||||||||||||||    
T  41965112 ggtggattctagggtgagggtccaattaagtccctca 41965148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 44876980 - 44876944
Alignment:
Q  269 tggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  44876980 tggattctagggtgagggatcaattaagtccctcacc 44876944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 27746206 - 27746164
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27746206 ggtggattctagcgtgagggttcaattaagtccctcaccagtg 27746164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 368
Target Start/End: Original strand, 27745556 - 27745657
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtactagtttatttgaccattagattaaatatgactataagatctcattatttataac 366  Q
    |||||||||||  ||||||||||||||||||||||||||  | ||| | |||| |||| |||||||||||||| | ||||| ||| ||| || | |||||    
T  27745556 ggtggattctaaggtgagggttcaattaagtccctcaccgatataccactttaattgatcattagattaaataagtctatatgatttcaatagtcataac 27745655  T
Q  367 ca 368  Q
    ||    
T  27745656 ca 27745657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 32772104 - 32772201
Alignment:
Q  271 gattctagcgtgagggttcaattaagtccctcaccagtgtactagtttatttgaccattagattaaatatgactataagatctcattatttataacca 368  Q
    |||||||  ||||||| ||||||||| ||||||||  ||||| | |||| ||||||||||||||||||| | ||||| ||||||| || | |||||||    
T  32772104 gattctaaggtgagggctcaattaagcccctcaccgatgtaccactttaattgaccattagattaaataagtctatatgatctcaatagtcataacca 32772201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 16449555 - 16449593
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  16449555 ggtggattctagggtgagggttcaattaagtccctcacc 16449593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 16459129 - 16459167
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  16459129 ggtggattctagggtgagggttcaattaagtccctcacc 16459167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 333
Target Start/End: Original strand, 24847783 - 24847849
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtactagtttatttgaccattagat 333  Q
    |||||||||||| |||||||||| ||||||||||||||| |||||| | || | |||||| ||||||    
T  24847783 ggtggattctagggtgagggttctattaagtccctcaccggtgtaccatttaaattgaccgttagat 24847849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 26240919 - 26240881
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  26240919 ggtggattctagggtgagggttcaattaagtccctcacc 26240881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 24848474 - 24848429
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtac 312  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||||    
T  24848474 ggtggattctagggtgagggttctattaagtccctcaccggtgtac 24848429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 26240114 - 26240152
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  26240114 ggtggattctagggtgagggatcaattaagtccctcacc 26240152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 368
Target Start/End: Original strand, 6942191 - 6942291
Alignment:
Q  268 gtggattctagcgtgagggttcaattaagtccctcaccagtgtactagtttatttgaccattagattaaatatgactataagatctcattatttataacc 367  Q
    ||||||||||  ||||||| |||||||||||| ||| | ||| || | ||||||  ||| |||||||||||||| ||| ||||| ||| || |||| |||    
T  6942191 gtggattctaaggtgagggatcaattaagtccttcatcggtgaaccactttattccaccgttagattaaatatgtctacaagatttcaatacttattacc 6942290  T
Q  368 a 368  Q
    |    
T  6942291 a 6942291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 19066973 - 19066929
Alignment:
Q  56 gttaagaaatctacaaatagaatttttgtcatggaaatataaatt 100  Q
    ||||||||||||| |||||||||| ||||| | ||||||||||||    
T  19066973 gttaagaaatctataaatagaattgttgtcttagaaatataaatt 19066929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 19114863 - 19114819
Alignment:
Q  56 gttaagaaatctacaaatagaatttttgtcatggaaatataaatt 100  Q
    ||||||||||||| |||||||||| ||||| | ||||||||||||    
T  19114863 gttaagaaatctataaatagaattgttgtcttagaaatataaatt 19114819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 31116733 - 31116685
Alignment:
Q  266 gggtggattctagcgtgagggttcaattaagtccctcaccagtgtacta 314  Q
    ||||||||||||| |||||||| |||||| |||||||||| ||| ||||    
T  31116733 gggtggattctagggtgagggtccaattaggtccctcaccggtggacta 31116685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 360
Target Start/End: Original strand, 54308454 - 54308546
Alignment:
Q  268 gtggattctagcgtgagggttcaattaagtccctcaccagtgtactagtttatttgaccattagattaaatatgactataagatctcattatt 360  Q
    ||||||||||| |||||||||||||||||||||||||| ||| || | ||  ||||||| ||||||||||||   ||||  ||||||||||||    
T  54308454 gtggattctagggtgagggttcaattaagtccctcaccggtgaaccacttattttgaccgttagattaaataatcctatttgatctcattatt 54308546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 20807937 - 20807982
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtac 312  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||    
T  20807937 ggtggattctagggtgagggttcaattaagtccctcaccggtgtac 20807982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 18745418 - 18745346
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtactagtttatttgaccattagattaaata 339  Q
    |||| ||||||| ||||||||||||| |||||||||||| ||| || | |  |||||||||||||||||||||    
T  18745418 ggtgaattctagggtgagggttcaatcaagtccctcaccggtgcaccactgaatttgaccattagattaaata 18745346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 4707004 - 4706959
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtac 312  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||||    
T  4707004 ggtggattctagggtgagggttctattaagtccctcaccggtgtac 4706959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 20808655 - 20808610
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtac 312  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||    
T  20808655 ggtggattctagggtgagggttcaagtaagtccctcaccggtgtac 20808610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 47571190 - 47571234
Alignment:
Q  261 caaaggggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||| ||||||||||||| ||||||| ||||||||||||||||||    
T  47571190 caaaagggtggattctagggtgagggatcaattaagtccctcacc 47571234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 15287566 - 15287605
Alignment:
Q  266 gggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  15287566 gggtggattctagggtgagggtccaattaagtccctcacc 15287605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 44698333 - 44698290
Alignment:
Q  54 tggttaagaaatctacaaatagaatttttgtcatggaaatataa 97  Q
    |||||||||||||||||||||||| ||||||| || ||||||||    
T  44698333 tggttaagaaatctacaaatagaaattttgtcttgaaaatataa 44698290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 302
Target Start/End: Complemental strand, 49350318 - 49350283
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctc 302  Q
    |||||||||||| |||||||||||||||||||||||    
T  49350318 ggtggattctagggtgagggttcaattaagtccctc 49350283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 49349676 - 49349714
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  49349676 ggtggattctagggtgagggatcaattaagtccctcacc 49349714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 54753577 - 54753619
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtg 309  Q
    |||| ||||||  ||||||||||||||||||||||||||||||    
T  54753577 ggtgaattctacggtgagggttcaattaagtccctcaccagtg 54753619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 9830573 - 9830610
Alignment:
Q  268 gtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  9830573 gtggattctcgggtgagggttcaattaagtccctcacc 9830610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 36540081 - 36540008
Alignment:
Q  265 ggggtggattctagcgtgagggttcaattaagtccctcaccagtgtactagtttatttgaccattagattaaat 338  Q
    |||||||| ||||| |||||||||||||| | ||||||||| | |||| | | | ||| |||||||||||||||    
T  36540081 ggggtggactctagggtgagggttcaattgaatccctcaccggcgtaccactcttttttaccattagattaaat 36540008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 48626160 - 48626127
Alignment:
Q  269 tggattctagcgtgagggttcaattaagtccctc 302  Q
    |||||||||| |||||||||||||||||||||||    
T  48626160 tggattctagggtgagggttcaattaagtccctc 48626127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 4020213 - 4020169
Alignment:
Q  54 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 98  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||    
T  4020213 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaa 4020169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 6785792 - 6785836
Alignment:
Q  54 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 98  Q
    |||||||| | ||||||||||||||||||||| || |||||||||    
T  6785792 tggttaaggattctacaaatagaatttttgtcttgaaaatataaa 6785836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 44291228 - 44291272
Alignment:
Q  54 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 98  Q
    |||||||| |||||| ||||||||||| |||| ||||||||||||    
T  44291228 tggttaaggaatctataaatagaatttctgtcttggaaatataaa 44291272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 34941502 - 34941544
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtg 309  Q
    |||||||||||| ||||||||||||||||||||||||| ||||    
T  34941502 ggtggattctagggtgagggttcaattaagtccctcactagtg 34941544  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 51386456 - 51386498
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtg 309  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  51386456 ggtggattttagggtgagggttcaattaagtccctcaccagtg 51386498  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 360
Target Start/End: Original strand, 56226462 - 56226555
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtactagtttatttgaccattagattaaatatgactataagatctcattatt 360  Q
    |||||||||||   |||||| ||||||||||| ||||||  ||||| | ||||||| ||||||||||| |||| ||| ||| ||||| ||||||    
T  56226462 ggtggattctaagatgagggatcaattaagtctctcaccgatgtaccactttatttaaccattagatttaataagaccataggatctaattatt 56226555  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 14527624 - 14527586
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  14527624 ggtggattctagggtgagggatcaattaagtccctcacc 14527586  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 16004490 - 16004448
Alignment:
Q  57 ttaagaaatctacaaatagaatttttgtcatggaaatataaat 99  Q
    |||||||||||| ||||||||||| |||| |||||||||||||    
T  16004490 ttaagaaatctataaatagaatttctgtcttggaaatataaat 16004448  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 24666129 - 24666167
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  24666129 ggtggattctagggtgagggatcaattaagtccctcacc 24666167  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 42792775 - 42792813
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  42792775 ggtggattctagggtgagggtccaattaagtccctcacc 42792813  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 52129420 - 52129458
Alignment:
Q  266 gggtggattctagcgtgagggttcaattaagtccctcac 304  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  52129420 gggtggattctaaggtgagggttcaattaagtccctcac 52129458  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 26354280 - 26354243
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcac 304  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  26354280 ggtgggttctagggtgagggttcaattaagtccctcac 26354243  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 20143280 - 20143324
Alignment:
Q  268 gtggattctagcgtgagggttcaattaagtccctcaccagtgtac 312  Q
    ||||||||||| ||||||| |||| ||||||||||||| ||||||    
T  20143280 gtggattctagggtgagggctcaactaagtccctcaccggtgtac 20143324  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 25055109 - 25055145
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctca 303  Q
    |||||||||||| |||||||||||||||||| |||||    
T  25055109 ggtggattctagggtgagggttcaattaagttcctca 25055145  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 56227103 - 56227031
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtactagtttatttgaccattagattaaata 339  Q
    |||||||||||| ||||||| ||||| |||||| ||||| |||||| | ||||||| ||| || |||| ||||    
T  56227103 ggtggattctagagtgagggctcaatgaagtccttcaccggtgtaccactttatttaaccgttggatttaata 56227031  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 40574141 - 40574185
Alignment:
Q  54 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 98  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||    
T  40574141 tggttaaggaatctacaaatagaaattttgtcttggaaatataaa 40574185  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 127033 - 127075
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtg 309  Q
    |||||||||||| |||||||||||| ||||||||||| |||||    
T  127033 ggtggattctagggtgagggttcaactaagtccctcatcagtg 127075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 127783 - 127745
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  127783 ggtggattctagggtgagggttcaattaagtccttcacc 127745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 20606969 - 20606931
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  20606969 ggtgaattctagggtgagggttcaattaagtccctcacc 20606931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 44297457 - 44297424
Alignment:
Q  272 attctagcgtgagggttcaattaagtccctcacc 305  Q
    ||||||| ||||||||||||||||||||||||||    
T  44297457 attctagggtgagggttcaattaagtccctcacc 44297424  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 1004773 - 1004817
Alignment:
Q  54 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 98  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||    
T  1004773 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaa 1004817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 34595981 - 34595937
Alignment:
Q  268 gtggattctagcgtgagggttcaattaagtccctcaccagtgtac 312  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||    
T  34595981 gtggattctagagtgagggttcaactaaatccctcaccggtgtac 34595937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 6464 - 6502
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcacc 305  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  6464 ggtgggttctagggtgagggttcaattaagtccctcacc 6502  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 5312241 - 5312283
Alignment:
Q  267 ggtggattctagcgtgagggttcaattaagtccctcaccagtg 309  Q
    |||| ||||||  ||||||||||||||||||||||||||||||    
T  5312241 ggtgaattctacagtgagggttcaattaagtccctcaccagtg 5312283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 21809804 - 21809850
Alignment:
Q  54 tggttaagaaatctacaaatagaatttttgtcatggaaatataaatt 100  Q
    ||||||||||||||| |||||||||| ||||| | ||||||||||||    
T  21809804 tggttaagaaatctataaatagaattgttgtcttagaaatataaatt 21809850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 52126 - 52081
Alignment:
Q  55 ggttaagaaatctacaaatagaatttttgtcatggaaatataaatt 100  Q
    |||||||||||||| |||||||||| ||||| | ||||||||||||    
T  52126 ggttaagaaatctataaatagaattgttgtcttagaaatataaatt 52081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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