View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_19 (Length: 408)
Name: NF20808_low_19
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_19 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 408
Target Start/End: Complemental strand, 31805666 - 31805265
Alignment:
| Q |
6 |
agcagcacagacacggttacatgtatatcgaacaagacactacaatgtcgttggtcaaaatgatttgaccggtgtaataatatgataaaatgacataatt |
105 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31805666 |
agcaacacaaacacggttacatgtatatcgaacaagacactacaatgtcgttggttgaaataatttgaccggtgtaataatatgataaaatgacataatt |
31805567 |
T |
|
| Q |
106 |
gaatgtaatcattatacgtcgacggtgtcagacgagaacacatagacattcgatcaaaagtatcggtgctaaagtgaagtagtaaaagattagtattatt |
205 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31805566 |
gaatgtaatcattataa-tcgacagtgtcagacgagaacacatagacattcgatcagaagtatcggtgctaaagtgaagtagtaaaagattagtattatt |
31805468 |
T |
|
| Q |
206 |
tacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacagagtacttcccaacatccggaaacggttgtttaagaaaaatcaacaacga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31805467 |
tacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacagagtacttcccaacatccggaaacggttgtttaagaaaaatcaacaacga |
31805368 |
T |
|
| Q |
306 |
aatcaaaatcaaagctaaacccatcttcgccgaaaacacaaacttccttggatcagacacacccatctcccatgctctacccgccacacgctttgatttc |
405 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31805367 |
aatcaaaatcaaagctaaacccatcttagctgaaaacacaaacttccttggatcagacacacccatctcccatgctctacccgccacacgctttgatttc |
31805268 |
T |
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| Q |
406 |
ttc |
408 |
Q |
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||| |
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| T |
31805267 |
ttc |
31805265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 2493465 - 2493426
Alignment:
| Q |
80 |
taataatatgataaaatgacataattgaatgtaatcatta |
119 |
Q |
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||||||| ||| |||||||||||||||||||||||||||| |
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| T |
2493465 |
taataatttgacaaaatgacataattgaatgtaatcatta |
2493426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 43816826 - 43816879
Alignment:
| Q |
206 |
tacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacagagt |
259 |
Q |
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||||||||||||| |||||||| || |||||||| ||||||||||||||||||| |
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| T |
43816826 |
tacctatactgaattcaaagactacgacaacagttagaatagcccaaacagagt |
43816879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 43831730 - 43831783
Alignment:
| Q |
206 |
tacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacagagt |
259 |
Q |
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|
||||||||||||| |||||||| || ||||| || ||||||||||||||||||| |
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| T |
43831730 |
tacctatactgaattcaaagacaactacaacggtgagaatagcccaaacagagt |
43831783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 43824768 - 43824819
Alignment:
| Q |
206 |
tacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacaga |
257 |
Q |
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||||||||||||| ||||||||||| || || || ||||||||||||||||| |
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| T |
43824768 |
tacctatactgaattcaaagacgacgacgacggtgagaatagcccaaacaga |
43824819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 8017494 - 8017531
Alignment:
| Q |
80 |
taataatatgataaaatgacataattgaatgtaatcat |
117 |
Q |
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||||||||||| |||||||||||||||| ||||||||| |
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| T |
8017494 |
taataatatgaaaaaatgacataattgagtgtaatcat |
8017531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 27096052 - 27096013
Alignment:
| Q |
80 |
taataatatgataaaatgacataattgaatgtaatcatta |
119 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||| |
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| T |
27096052 |
taataatttgacaaaatgacataattgaatgtaatcatta |
27096013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 2976701 - 2976739
Alignment:
| Q |
79 |
gtaataatatgataaaatgacataattgaatgtaatcat |
117 |
Q |
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|||||||| ||| |||||||||||||||||||||||||| |
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| T |
2976701 |
gtaataatttgagaaaatgacataattgaatgtaatcat |
2976739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 8457932 - 8457969
Alignment:
| Q |
79 |
gtaataatatgataaaatgacataattgaatgtaatca |
116 |
Q |
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|||||||| ||| ||||||||||||||||||||||||| |
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| T |
8457932 |
gtaataatttgagaaaatgacataattgaatgtaatca |
8457969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 32843724 - 32843757
Alignment:
| Q |
83 |
taatatgataaaatgacataattgaatgtaatca |
116 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
32843724 |
taatatgagaaaatgacataattgaatgtaatca |
32843757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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