View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_20 (Length: 406)
Name: NF20808_low_20
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 7622201 - 7622577
Alignment:
| Q |
20 |
tctcgaaccagatagaattgtagtaacaggtggcaaaattcttccgaatacatataagatgaagcatattagttattacaagtctcttttaatcacagta |
119 |
Q |
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| T |
7622201 |
tctcgaaccagatagaattgtagtaacaggtggcaaaattcttccgaatacatataagatgaagcatattagttattacaagtctcttttaatcacagta |
7622300 |
T |
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| Q |
120 |
tataccttcccaaattactaatgaacccattatcaattgatctagaaatacaaactttgaggcatgcaaataacataactaactgtcaatagtacacatc |
219 |
Q |
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| T |
7622301 |
tataccttcccaaattactaatgaacccattatcaattgatctagaaatacaaactttgaggcatgcaaataacataactaactgtcaatagtacacatc |
7622400 |
T |
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| Q |
220 |
ctatatttttcttttcataggaacaaggtgaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccagcacttgttccttgtcaaaa |
319 |
Q |
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| T |
7622401 |
ctatgtttttcttttcataggaacaaggtgaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccagcacttgttccttgtcaaaa |
7622500 |
T |
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| Q |
320 |
ccatgaggcagattccaatcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcat |
396 |
Q |
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| T |
7622501 |
ccatgaggcagattccaatcaaaagattgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcat |
7622577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 125 - 396
Target Start/End: Original strand, 7633988 - 7634264
Alignment:
| Q |
125 |
cttcccaaattactaatgaacccattatcaattgatctagaaata---caaactttgaggcatgcaaataacataactaactgtcaatagtacacat--c |
219 |
Q |
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| T |
7633988 |
cttcccaaattacaaatgaaaccattatcaattgatctagaaataatacaaactttgaggcatgcaaataacataactaattgtcaatagtacatatatc |
7634087 |
T |
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| Q |
220 |
ctatatttttcttttcataggaacaaggtgaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccagcacttgttccttgtcaaaa |
319 |
Q |
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| T |
7634088 |
ctatggttttcttttcctaggaaaaaggcaaagatcaattttcttatgcatagttattcctggtttcacttttgtatccaacacttgttccttgtcaaaa |
7634187 |
T |
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| Q |
320 |
ccatgaggcagattccaatcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcat |
396 |
Q |
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| T |
7634188 |
ccatgaggcaacttccaatcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcat |
7634264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 226 - 396
Target Start/End: Original strand, 7626958 - 7627128
Alignment:
| Q |
226 |
ttttcttttcataggaacaaggtgaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccagcacttgttccttgtcaaaaccatga |
325 |
Q |
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| T |
7626958 |
ttttcttttcttaggaacaaggtaaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccaacacttgttccttgtcaaaaccatga |
7627057 |
T |
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| Q |
326 |
ggcagattccaatcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcat |
396 |
Q |
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| T |
7627058 |
ggcagcttccagtcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcat |
7627128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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