View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_21 (Length: 395)
Name: NF20808_low_21
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 379
Target Start/End: Original strand, 33241489 - 33241856
Alignment:
| Q |
13 |
aatatatcataagcaaacttaatatttcaaaaatgagatctattgttacgactacaagtatcctctgtactctttcccttgagaaatattcgggttttcc |
112 |
Q |
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| T |
33241489 |
aatatatcagaagcaaacttaatatttaaaatatgagatctattgttacgactacaagtatcctccgtactctttcccttgagaaatatttgggttttcc |
33241588 |
T |
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| Q |
113 |
catgatgcatggacgcctccaaaggagagattttgaatttttt-gaagaaaaaataagccaacggttagcttcgtggaaacatcacctgttaaacaaagc |
211 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
33241589 |
catgatgcatggaggcctccaaaggagagattttgaatttttttgaggaaaacataagccaacggttagcttcgtggcaacatcacctgttgaacaaagt |
33241688 |
T |
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| Q |
212 |
tagtcgaatgactttggttaaatctgtattaaattctattccctattattatatgcaaggggtttggttgccccaatcaacttgtgagtctattgataga |
311 |
Q |
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| T |
33241689 |
tggtcgaatgactttggttaaatctgtattaaattctattccctattattatatgcaagtggcttggttgccccaatcaacttgtgagtctattgataga |
33241788 |
T |
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| Q |
312 |
ttggcaataaatttctagtggaaaggttcttccaattttaggatctacttatttggctgggagaaaat |
379 |
Q |
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| T |
33241789 |
ttggcaataaatttcttgtggaaaggttcttccaattttaggatctacttagttggctgggagaaaat |
33241856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 379
Target Start/End: Original strand, 33249410 - 33249777
Alignment:
| Q |
13 |
aatatatcataagcaaacttaatatttcaaaaatgagatctattgttacgactacaagtatcctctgtactctttcccttgagaaatattcgggttttcc |
112 |
Q |
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||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
33249410 |
aatatatcagaagcaaacttaatatttaaaatatgagatctattgttacgactacaagtatcctccgtactctttcccttgagaaatatttgggttttcc |
33249509 |
T |
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| Q |
113 |
catgatgcatggacgcctccaaaggagagattttgaatttttt-gaagaaaaaataagccaacggttagcttcgtggaaacatcacctgttaaacaaagc |
211 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
33249510 |
catgatgcatggaggcctccaaaggagagattttgaatttttttgaggaaaacataagccaacggttagcttcgtggcaacatcacctgttgaacaaagt |
33249609 |
T |
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| Q |
212 |
tagtcgaatgactttggttaaatctgtattaaattctattccctattattatatgcaaggggtttggttgccccaatcaacttgtgagtctattgataga |
311 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
33249610 |
tggtcgaatgactttggttaaatctgtattaaattctattccctattattatatgcaagtggcttggttgccccaatcaacttgtgagtctattgataga |
33249709 |
T |
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| Q |
312 |
ttggcaataaatttctagtggaaaggttcttccaattttaggatctacttatttggctgggagaaaat |
379 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33249710 |
ttggcaataaatttcttgtggaaaggttcttccaattttaggatctacttagttggctgggagaaaat |
33249777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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