View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_23 (Length: 374)
Name: NF20808_low_23
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 361
Target Start/End: Complemental strand, 41740142 - 41739798
Alignment:
| Q |
17 |
catcaaaacccgaaaactatggttcccttgcaaatacttttgtctcaatgcaacttccttaaccataatcgctgtttccgtcaaactctccgttgatctc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41740142 |
catcaaaacccgaaaactatggttcccttgcaaatacttttgtctcaatgcaacttccttaaccataatcgctgtttccgtcaaactctccgttgatctc |
41740043 |
T |
|
| Q |
117 |
aacactcctatgcctcaccgtcatgatcagctagcaaagctagctagcagtgctatcatttgcactatcatggctaattctatgccttctcttggtgtga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41740042 |
aacactcctatgcctcaccgtcatgatcagctagcaaagctagctagcagtgctatcatttgcactatcatggctaattctatgccttctcttggtgtga |
41739943 |
T |
|
| Q |
217 |
cgcagaacagtgaaaccatgatgaatgttttggctatggctattttagtgattactatgattgttaatatttgtattcaatttggaactggggttatcta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41739942 |
cgcagaacagtgaaaccatgatgaatgttttggctatggctattttagtgattactatgattgttaatatttgtattcaatttggaactggggttatcta |
41739843 |
T |
|
| Q |
317 |
tgagttttggattgaacatggtgttattatgtttcttatggttat |
361 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41739842 |
tgagttttggattgaacacggtgttattatgtttcttatggttat |
41739798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 41745618 - 41745962
Alignment:
| Q |
17 |
catcaaaacccgaaaactatggttcccttgcaaatacttttgtctcaatgcaacttccttaaccataatcgctgtttccgtcaaactctccgttgatctc |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||| |
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| T |
41745618 |
catcaaaacccgcaaactatggttcccttgcaaatacttttgtctcaacgcaacttccttaaccataatcgctgtttctttaaaactctcggttgatctc |
41745717 |
T |
|
| Q |
117 |
aacactcctatgcctcaccgtcatgatcagctagcaaagctagctagcagtgctatcatttgcactatcatggctaattctatgccttctcttggtgtga |
216 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||| | || ||||| |||||||||||||| ||||| ||||||||||| | |
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| T |
41745718 |
aacactcctatgcctcaccgtcatgatcagctagcgaaactagctagcagtgctttaatctgcacaatcatggctaattccatgccatctcttggtgtca |
41745817 |
T |
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| Q |
217 |
cgcagaacagtgaaaccatgatgaatgttttggctatggctattttagtgattactatgattgttaatatttgtattcaatttggaactggggttatcta |
316 |
Q |
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| | ||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41745818 |
caccgaacaatgaaaccatgttgaatgttttggctatggctattttagtagttactatgattgttaatatctgtattcaatttggaactggggttatcta |
41745917 |
T |
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| Q |
317 |
tgagttttggattgaacatggtgttattatgtttcttatggttat |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41745918 |
tgagttttggattgaacatggtgttattatgtttcttatggttat |
41745962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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