View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_24 (Length: 369)
Name: NF20808_low_24
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 21 - 356
Target Start/End: Complemental strand, 24168984 - 24168649
Alignment:
| Q |
21 |
gacacatcagcattttccggtaaaaccattttattctcctccaaatatttcaaaacagcttctccgtcttcgtattgcgatggatagcaatgctccggtg |
120 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24168984 |
gacacgtcagcattttccggtaaaaccattttattctcctccaaatatttcaaaacagcttctccgtcttcgtattgcgacggatagcaatgctccggtg |
24168885 |
T |
|
| Q |
121 |
tgaggcggtagttgacagagacaacaacaacagacatttcccagcagagtctacgacaaaaagcatcatagtagatagaggaggggcaaagataggtgaa |
220 |
Q |
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||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24168884 |
tgaggcggtagttgacagagacaacaacaacggatatttcccggcagagtctacggcaaaaagcatcatagtagatagaggaggggcaaagataggtgaa |
24168785 |
T |
|
| Q |
221 |
gccgccaccatggaagaaaatgacaacgggaagggaggttgttttggttgcaccaccatctccgacgacttctccaccaacagtgggtgtaaagagacgg |
320 |
Q |
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||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24168784 |
gccaccaccgtggaagaaaatgacaacgggaagggaggttgttttggttgcaccaccatctccgacgacttctccgccaacagtgggtgtaaagagacgg |
24168685 |
T |
|
| Q |
321 |
aaccaaacattattttcggagttaacgataatgtct |
356 |
Q |
| |
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|||||||| |||||||||||||||||| |||||||| |
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| T |
24168684 |
aaccaaacgttattttcggagttaacggtaatgtct |
24168649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 283
Target Start/End: Complemental strand, 24152157 - 24151895
Alignment:
| Q |
21 |
gacacatcagcattttccggtaaaaccattttattctcctccaaatatttcaaaacagcttctccgtcttcgtattgcgatggatagcaatgctccggtg |
120 |
Q |
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| T |
24152157 |
gacacgtcagcattttccggtaaaaccgttttattctcttccaaaaatttcagcacagcctctccatcatcatattgcgacggatatctatgctccggtg |
24152058 |
T |
|
| Q |
121 |
tgaggcggtagttgacagagacaacaacaacagacatttcccagcagagtctacgacaaaaagcatcatagtagatagaggaggggcaaagataggtgaa |
220 |
Q |
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| |||||||||||||||||||| |||||| | | | ||||| |||||||||||| || |||||||| | ||||| ||||||||| ||||| | |||| |
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| T |
24152057 |
taaggcggtagttgacagagacgacaacagcgaaaacttccctgcagagtctacggcataaagcatcgtgatagattgaggagggggaaagaaaactgaa |
24151958 |
T |
|
| Q |
221 |
gccgccaccatggaagaaaatgacaacgggaagggaggttgttttggttgcaccaccatctcc |
283 |
Q |
| |
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||| ||||| |||||| |||||| || ||||||||||||||||| || |||||||||||||| |
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| T |
24151957 |
gccaccaccgtggaagtaaatgatgacaggaagggaggttgttttagtggcaccaccatctcc |
24151895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 78 - 347
Target Start/End: Complemental strand, 24189169 - 24188900
Alignment:
| Q |
78 |
gcttctccgtcttcgtattgcgatggatagcaatgctccggtgtgaggcggtagttgacagagacaacaacaacagacatttcccagcagagtctacgac |
177 |
Q |
| |
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|||||||||||||| |||||||| ||||||| |||||| |||| || ||||||||||| ||||||| ||| | || ||||||| |||||||||||||| |
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| T |
24189169 |
gcttctccgtcttcatattgcgacggatagcgatgctctggtgcaagtcggtagttgacggagacaatgacagcggagatttcccggcagagtctacgac |
24189070 |
T |
|
| Q |
178 |
aaaaagcatcatagtagatagaggaggggcaaagataggtgaagccgccaccatggaagaaaatgacaacgggaagggaggttgttttggttgcaccacc |
277 |
Q |
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||| ||||| ||| | | ||||| | ||||| | |||||||| ||||| |||||||||||||| |||||||||||||| |||||||| | |||||| |
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| T |
24189069 |
aaaccgcatcgtagaggtttgaggaagaagaaagaaaagtgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtggaaccacc |
24188970 |
T |
|
| Q |
278 |
atctccgacgacttctccaccaacagtgggtgtaaagagacggaaccaaacattattttcggagttaacg |
347 |
Q |
| |
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|||| || ||||||||| ||||||| || ||||||||||||||||||| || ||||||||||||||| |
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| T |
24188969 |
atcttcggtgacttctccggcaacagttggagtaaagagacggaaccaaaggttgttttcggagttaacg |
24188900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 78 - 356
Target Start/End: Complemental strand, 24179363 - 24179085
Alignment:
| Q |
78 |
gcttctccgtcttcgtattgcgatggatagcaatgctccggtgtgaggcggtagttgacagagacaacaacaacagacatttcccagcagagtctacgac |
177 |
Q |
| |
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|||||||||||||| ||||| || ||||| | |||||| ||||| || ||||||||||| ||||||| ||| | || ||||||| |||||||||||| | |
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| T |
24179363 |
gcttctccgtcttcatattgtgacggataccgatgctctggtgtaagtcggtagttgacggagacaatgacagcggagatttcccggcagagtctacggc |
24179264 |
T |
|
| Q |
178 |
aaaaagcatcatagtagatagaggaggggcaaagataggtgaagccgccaccatggaagaaaatgacaacgggaagggaggttgttttggttgcaccacc |
277 |
Q |
| |
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||| ||| || ||| | | ||||| || ||||| | ||| |||| || || |||||||||||||| || ||||||||||||| |||||| |||||||| |
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| T |
24179263 |
aaacagcgtcgtagaggttcgaggaaggagaaagaaaagtgtagccaccgccgtggaagaaaatgacgacaggaagggaggttgctttggtggcaccacc |
24179164 |
T |
|
| Q |
278 |
atctccgacgacttctccaccaacagtgggtgtaaagagacggaaccaaacattattttcggagttaacgataatgtct |
356 |
Q |
| |
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||||||| ||||||||| |||||||||| ||||||||||| |||||||| |||||||||| ||||||| ||| |||| |
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| T |
24179163 |
atctccggtgacttctccggcaacagtgggggtaaagagacgaaaccaaacgttattttcggcgttaacggtaacgtct |
24179085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 24112869 - 24112741
Alignment:
| Q |
21 |
gacacatcagcattttccggtaaaaccattttattctcctccaaatatttcaaaacagcttctccgtcttcgtattgcgatggatagcaatgctccggtg |
120 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
24112869 |
gacacgtcagcattttccggtaaaaccgttttattctcgtccaaatatttcaaaacagcttctccgtcttcgtattgcgatggataccgatgctccggtg |
24112770 |
T |
|
| Q |
121 |
tgaggcggtagttgacagagacaacaaca |
149 |
Q |
| |
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|| | ||||||||||| ||||| |||||| |
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| T |
24112769 |
tgtgacggtagttgacggagacgacaaca |
24112741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 24112584 - 24112531
Alignment:
| Q |
303 |
gtgggtgtaaagagacggaaccaaacattattttcggagttaacgataatgtct |
356 |
Q |
| |
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|||||||| ||||||||||||||||| |||| ||| | ||||||||||| |||| |
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| T |
24112584 |
gtgggtgtgaagagacggaaccaaacgttatcttctgcgttaacgataacgtct |
24112531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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