View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_25 (Length: 356)
Name: NF20808_low_25
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 38237815 - 38237494
Alignment:
| Q |
20 |
gatatatcattttctaataatgattcttcctctaaaaataaactataaattattaccnnnnnnnn-agtcttagcacgtgattgttttcaattgatagta |
118 |
Q |
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| T |
38237815 |
gatatatcattttctaataatgattcttcctctaaaaataaactataaattatcacctttttttttagtcttagcacgtgattgttttcaattgatagta |
38237716 |
T |
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| Q |
119 |
agaaatgtttagctaacaagaaaatagtgtgatttattggctattgaggaccgtcaatgtttctttttgttgagtttattaacacgggtatggttcaagg |
218 |
Q |
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| T |
38237715 |
agaaatgtttagctaacaagaaaatagtttgatttattagctattgaggaccgtcaatgtttctttttgttgagtttattaacacgggtatggttcaagg |
38237616 |
T |
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| Q |
219 |
gctatcttgtaaacttgaccttagtatttatacacgagttgtaatatgttaaactagacggtagacataattgaccgaacgccattatcgaatttcgtat |
318 |
Q |
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| T |
38237615 |
gctatcttgtaaacttgaccttagtatttatacacgagttgtaatatgttaaactaaacggtagacataattgaccgaacgccattatcgaatttcgtat |
38237516 |
T |
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| Q |
319 |
gttctctttttgtgtttttcat |
340 |
Q |
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| T |
38237515 |
gttctctttttgtgtttttcat |
38237494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 303
Target Start/End: Complemental strand, 38213780 - 38213627
Alignment:
| Q |
152 |
ttattggctattgaggaccgtcaatgtttctttttgttgagtttattaacacgggtat--ggttcaagggctatcttgtaaacttgaccttagtatttat |
249 |
Q |
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|||||||| | ||||||| || ||||| ||||||||||||| ||| |||||||||| |||||| ||| ||||| | ||| || ||| ||||| |
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| T |
38213780 |
ttattggcaactgaggactatctatgttcttttttgttgagttgattgacacgggtatatggttcaggggtaatcttatcaaccaaactgtagcatttaa |
38213681 |
T |
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| Q |
250 |
acacgagttgtaatatgttaaactagacggtagacataattgaccgaacgccat |
303 |
Q |
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||| ||||||||||| ||||||||||| ||||||| ||||| ||||||||||| |
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| T |
38213680 |
acagaagttgtaatatattaaactagacagtagacacaattggccgaacgccat |
38213627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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