View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_26 (Length: 348)
Name: NF20808_low_26
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 146 - 339
Target Start/End: Original strand, 19185008 - 19185201
Alignment:
| Q |
146 |
aacatcaaccctagatcaaaacctaggaatatcgatcatcgaatccaacatattcgccatcgatcatgtcaacatgcagccttcaaaaaatatttgaaaa |
245 |
Q |
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| T |
19185008 |
aacatcaaccctagatcaaaacctaggaatatcgatcatcaaatccaacatattagccatcgatcatgtcaacatgcagccttcaaaaaatatttgaaaa |
19185107 |
T |
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| Q |
246 |
tcctccattgtatgcagaaaacccaactatacttcttgatcaatctcttgaatcatggaagaaccaaatcaaacccatacaacattcttcttct |
339 |
Q |
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| T |
19185108 |
tcctccattgtatccagaaaacccaactatacttcttgatcaatctcttgaatcatggaagaaccaaatcaaacccatacaacattcttcttct |
19185201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 19184802 - 19184973
Alignment:
| Q |
17 |
attttcgtgtacctttccccacttttctcccatttcaaccaccaaaacactcatattgttgtttatcttttctaatcctctttcgtatatatattttgtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19184802 |
attttcgtgtacctttccccacttttctcccatttcaaccaccaaaacactcatattgttgtttatcttttctaatcctctttcgtatatatgttttgtt |
19184901 |
T |
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| Q |
117 |
tttctttctctctaaccttaaaagagaaaaacatcaaccctagatcaaaacctaggaatatcgatcatcgaatcc |
191 |
Q |
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| T |
19184902 |
tttctttctctctaacct---atgagaaaaacatcaaccctagatcaaaacctaggaatatcaatcatcgaatcc |
19184973 |
T |
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