View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_3 (Length: 689)
Name: NF20808_low_3
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_3 |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 283 - 677
Target Start/End: Original strand, 10786354 - 10786747
Alignment:
| Q |
283 |
gaaactttcccaataagttcaatcccgcgcttttctatgtttattttaaataaattgactaaaactaaaattcttaagtaaaacataaattttagtaatt |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10786354 |
gaaactttcccaataagttcaatcccgcgcttttctatgtttattttaaataaattgactaaaactaaaattcttaagtaaaacataaattttagtaatt |
10786453 |
T |
|
| Q |
383 |
gaatctaggactacacacattttggtttaacattgaaccattgtgagatgcctannnnnnnnnnnnnnnnngttatatcttttccgatatataactaata |
482 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10786454 |
gaatctaggactacacaaattttggtttaacattgaaccattgtgagatgcctatttttatttttatttt-gttatatcttttccgatatataactaata |
10786552 |
T |
|
| Q |
483 |
cctttggtctttatattnnnnnnnnnnnnntttgagatcccaaaattttgggaaccaactatttagctcgccttacacttgctaagggtcgggcctgact |
582 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10786553 |
cctttggtctttatattaacaaaataaaaatttgagatcccaaaattttgggaaccaactatttagctcgccttacacttgctaagggtcgggcctgact |
10786652 |
T |
|
| Q |
583 |
actataccaccggttaaataaccacatatcatgagttttaaaattaaaacgtgtttaaataatataataacttttttaattatacaacacaggtt |
677 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10786653 |
actataccaccggttaaataaccacatatcatgagctttaaaattaaaacgtgtttaaataatataataacttttttaattatacaacataggtt |
10786747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 103 - 285
Target Start/End: Original strand, 10786131 - 10786313
Alignment:
| Q |
103 |
tgcatgattaaacttaattattttgaaagaaatactaattatttaaggggacttattttgtgttaatacaaacaaatgacaagaagtttaatacatataa |
202 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10786131 |
tgcatgattaaacttaatttttttgaaagaaatactaattatttaaggggacttattttgtgttaatacaaacaaatgacaagaagtttaatacatataa |
10786230 |
T |
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| Q |
203 |
tagttttctattnnnnnnngtagttttcgacatttagcatagagccctgaaatgcatattaattgtaaattttataaaaagaa |
285 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10786231 |
tagttttctattaaaaaaagtagttttcgacatttagtatagagccctgaaatgcatattaattgtaaattttataaaaagaa |
10786313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 10786082 - 10786131
Alignment:
| Q |
17 |
aaatagtgtattggtacttgttatctaaaacaagtaataaattggtactt |
66 |
Q |
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| T |
10786082 |
aaatagtgtattggtacttgttatctaaaacaagtaataaattggtactt |
10786131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 4e-74; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 23 - 285
Target Start/End: Complemental strand, 50506839 - 50506570
Alignment:
| Q |
23 |
tgtattggtacttgttatctaaaacaagtaataaattggtacttttatcgtggaaaaatagtaacaaactagtaccagcatgcatgattaaacttaatta |
122 |
Q |
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||||||||||||||||| ||||| |||||||||||| ||||| |||||| || |||||||||||||| |||||| |||||| |||||||| ||||||| |
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| T |
50506839 |
tgtattggtacttgttacttaaaaaaagtaataaattagtactattatcgggggaaaatagtaacaaattagtactagcatgtatgattaagcttaattt |
50506740 |
T |
|
| Q |
123 |
ttttgaaagaaatactaattatttaaggggacttattttg---tgttaatacaaacaaatgacaagaagtttaatacatataatagttttctattnnnnn |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50506739 |
ttttgaaagaaatactaattatttaaggagacttattttgtgttgttaatacaaacaaatgacaagaaatttaatacatataatagttttctattaaaaa |
50506640 |
T |
|
| Q |
220 |
nngtagttttcgacatttagca----tagagccctgaaatgcatattaattgtaaattttataaaaagaa |
285 |
Q |
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||| |||||||||||||| | ||| || |||||||||||||||||||||||||||||||| |||| |
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| T |
50506639 |
aagtaattttcgacatttagtatagctagggctctgaaatgcatattaattgtaaattttataaatagaa |
50506570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 513 - 677
Target Start/End: Complemental strand, 50506239 - 50506075
Alignment:
| Q |
513 |
tttgagatcccaaaattttgggaaccaactatttagctcgccttacacttgctaagggtcgggcctgactactataccaccggttaaataaccacatatc |
612 |
Q |
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|||||| |||||||||| || ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
50506239 |
tttgaggtcccaaaattgtgtgaaccaactatttagctcgccttgcacttgctaagggccgggccggactactataccaccggttaaataaccacatatc |
50506140 |
T |
|
| Q |
613 |
atgagttttaaaattaaaacgtgtttaaataatataataacttttttaattatacaacacaggtt |
677 |
Q |
| |
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||||| |||||||| |||||||| |||||||||||||||| | |||||||||| |||| ||||| |
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| T |
50506139 |
atgagatttaaaatcaaaacgtgcttaaataatataataattgctttaattatataacataggtt |
50506075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 1094643 - 1094686
Alignment:
| Q |
76 |
aaaaatagtaacaaactagtaccagcatgcatgattaaacttaa |
119 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
1094643 |
aaaaatagtaacaaattagtactagcatgcatgattaaacttaa |
1094686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 50506546 - 50506499
Alignment:
| Q |
314 |
tttctatgttt-attttaaataaattgactaaaactaaaattcttaag |
360 |
Q |
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| T |
50506546 |
tttctatgttttattttaaataaattgactaaaactaaaatgcttaag |
50506499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 402 - 436
Target Start/End: Complemental strand, 50506345 - 50506311
Alignment:
| Q |
402 |
ttttggtttaacattgaaccattgtgagatgccta |
436 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
50506345 |
ttttggtttaacattgaaccattgtgagatgccta |
50506311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 50506474 - 50506441
Alignment:
| Q |
398 |
cacattttggtttaacattgaaccattgtgagat |
431 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
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|
| T |
50506474 |
cacatttttgtttaacattgaaccattgtgagat |
50506441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 18306 - 18192
Alignment:
| Q |
99 |
agcatgcatgattaaacttaattattttgaaagaaatactaattatttaaggggacttattttgtgttaatacaaacaaatgacaagaagtttaatacat |
198 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| | ||||||||||||||||||| || || ||| ||| |
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| T |
18306 |
agcatgcatgattaaacttaaaacaattgaaagaaatactaattatttaaggg-acttaatttgcgctaatacaaacaaatgacaataaattcaatgcat |
18208 |
T |
|
| Q |
199 |
ataatagttttctatt |
214 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
18207 |
acaatagttttctatt |
18192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 32347885 - 32347957
Alignment:
| Q |
77 |
aaaatagtaacaaactagtaccagcatgcatgattaaacttaattattttgaaagaaatactaattatttaaggg |
151 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||||||||||| | | ||| |||||||||||||||||||| |
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|
| T |
32347885 |
aaaatagtaacaaacaagtactagcatgcatgattaaacttaacaaaat--aaaaaaatactaattatttaaggg |
32347957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 39824834 - 39824791
Alignment:
| Q |
76 |
aaaaatagtaacaaactagtaccagcatgcatgattaaacttaa |
119 |
Q |
| |
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|||||||||| |||| ||||| |||||||||||||||||||||| |
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|
| T |
39824834 |
aaaaatagtagcaaattagtaacagcatgcatgattaaacttaa |
39824791 |
T |
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Back To:
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