View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_31 (Length: 290)
Name: NF20808_low_31
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 8031612 - 8031351
Alignment:
| Q |
17 |
aaaacataccatggtgcaacctttacacggtgcatcgggtccatcgcattgaacccaagttaaatcactgccggtgtcgatgtcaagctcgtaaggtttg |
116 |
Q |
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| T |
8031612 |
aaaacataccatggtgcaacctttacacggtgcatcgggtccatcgcattgaacccaagttaaatcactgccggtgtcgatgtcaagctcgtaaggtttg |
8031513 |
T |
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| Q |
117 |
ggaggattgccaatgttgatggacacggtgtataacctacatcagaggagcatacatacatacatataaattataactcaataaactattgtaatctata |
216 |
Q |
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| T |
8031512 |
ggaggattgccaatgttgatggacacggtgtataacctacatcagaggagcatgcatacatacatataaattataactcaataaactattgtaatctata |
8031413 |
T |
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| Q |
217 |
atttataaactagaataaaaaattcaaaaagtcaatgttaggtcacccattgaaaatgatat |
278 |
Q |
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| T |
8031412 |
atttataaactagaataaaaaattcaaaaagtcaatgttaggtcacccattgaaaatgatat |
8031351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 8021625 - 8021435
Alignment:
| Q |
17 |
aaaacataccatggtgcaacctttacacggtgcatcgggtccatcgcattgaacccaagttaaatcactgccggtgtcgatgtcaagctcgtaaggtttg |
116 |
Q |
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| T |
8021625 |
aaaacataccaaagtgcaacctttacacggtgcatcgggtccatcacattgaacccaagttaaatcactgccggtgtcaatgtcaagctcgtaaggattg |
8021526 |
T |
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| Q |
117 |
ggaggattgccaatgttgatggacacggtgtataacctacatc-agaggagcatacatacatacatataaattataactcaataaactatt |
206 |
Q |
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| T |
8021525 |
ggaggattgccaatgttgatggacacggtgtatatcctacatcaagaggagcatacgtacatacatataaattataactcaataaactatt |
8021435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 8021423 - 8021330
Alignment:
| Q |
190 |
taactcaataaactattgtaatctataattta----taaactagaataaaaaattcaaaaagtcaatgtta-ggtcacccattgaaaatgatat |
278 |
Q |
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| T |
8021423 |
taactcaataacctattgtaatctataatttataaataaactagaagaaaaaactcaaaaagtcaatgttagggtcacccattgaaaatgatat |
8021330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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