View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20808_low_41 (Length: 254)

Name: NF20808_low_41
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20808_low_41
NF20808_low_41
[»] chr3 (15 HSPs)
chr3 (10-254)||(48730841-48731085)
chr3 (74-239)||(12710658-12710823)
chr3 (85-239)||(30662150-30662304)
chr3 (76-239)||(40943519-40943682)
chr3 (76-239)||(20550221-20550384)
chr3 (86-239)||(26049559-26049712)
chr3 (74-251)||(26136289-26136466)
chr3 (86-239)||(9505140-9505293)
chr3 (76-184)||(54432265-54432373)
chr3 (171-237)||(18074629-18074695)
chr3 (122-239)||(31589626-31589743)
chr3 (74-139)||(49026575-49026640)
chr3 (172-239)||(52199483-52199550)
chr3 (79-237)||(15822370-15822528)
chr3 (86-184)||(46293287-46293385)
[»] chr1 (23 HSPs)
chr1 (85-239)||(38061197-38061351)
chr1 (85-239)||(47983222-47983376)
chr1 (74-239)||(28006306-28006471)
chr1 (74-239)||(29677538-29677703)
chr1 (73-239)||(39802786-39802952)
chr1 (74-239)||(5204488-5204653)
chr1 (95-239)||(7995948-7996092)
chr1 (76-239)||(40159649-40159812)
chr1 (171-239)||(6413292-6413360)
chr1 (74-239)||(31816524-31816689)
chr1 (75-239)||(45581027-45581191)
chr1 (85-239)||(50447308-50447462)
chr1 (122-239)||(24575913-24576030)
chr1 (171-239)||(7841676-7841743)
chr1 (91-235)||(48575103-48575247)
chr1 (88-239)||(15257190-15257341)
chr1 (85-239)||(7956291-7956445)
chr1 (74-239)||(27076534-27076699)
chr1 (171-239)||(12224594-12224662)
chr1 (171-239)||(25124904-25124972)
chr1 (171-238)||(45653451-45653518)
chr1 (146-239)||(15014343-15014436)
chr1 (86-239)||(15306461-15306614)
[»] chr5 (22 HSPs)
chr5 (85-239)||(26298278-26298432)
chr5 (85-239)||(26299814-26299968)
chr5 (85-239)||(39407373-39407527)
chr5 (85-239)||(27450600-27450754)
chr5 (85-239)||(34719676-34719830)
chr5 (74-239)||(10327886-10328051)
chr5 (74-239)||(27196033-27196198)
chr5 (85-239)||(19716150-19716299)
chr5 (85-239)||(34857314-34857468)
chr5 (78-239)||(10493945-10494106)
chr5 (122-239)||(34724773-34724890)
chr5 (85-205)||(34723706-34723826)
chr5 (75-239)||(3457783-3457951)
chr5 (74-239)||(32945040-32945205)
chr5 (172-239)||(5382844-5382911)
chr5 (85-185)||(39409107-39409207)
chr5 (74-185)||(28246687-28246799)
chr5 (74-216)||(1225307-1225449)
chr5 (74-139)||(36523707-36523772)
chr5 (187-239)||(28247479-28247531)
chr5 (74-239)||(24535963-24536128)
chr5 (167-239)||(40056382-40056454)
[»] chr4 (29 HSPs)
chr4 (85-239)||(24007922-24008076)
chr4 (85-239)||(12673047-12673201)
chr4 (74-239)||(51995034-51995199)
chr4 (74-239)||(55892004-55892169)
chr4 (122-239)||(13455705-13455822)
chr4 (74-239)||(46944563-46944728)
chr4 (73-237)||(80452-80616)
chr4 (76-239)||(40797788-40797951)
chr4 (88-239)||(1803468-1803614)
chr4 (74-239)||(48802494-48802660)
chr4 (126-239)||(34980523-34980636)
chr4 (172-239)||(28265692-28265759)
chr4 (97-239)||(51407968-51408110)
chr4 (74-226)||(43798255-43798407)
chr4 (85-199)||(44378217-44378331)
chr4 (85-184)||(25134541-25134640)
chr4 (86-236)||(22721296-22721445)
chr4 (89-239)||(49405654-49405804)
chr4 (85-239)||(9222151-9222303)
chr4 (164-239)||(28470865-28470939)
chr4 (86-236)||(15697105-15697255)
chr4 (126-236)||(39736691-39736801)
chr4 (86-239)||(11055245-11055398)
chr4 (171-232)||(19455184-19455245)
chr4 (171-239)||(9874227-9874295)
chr4 (171-239)||(36644004-36644071)
chr4 (122-205)||(7505533-7505616)
chr4 (86-239)||(48977544-48977697)
chr4 (145-205)||(49061702-49061762)
[»] chr7 (18 HSPs)
chr7 (74-239)||(46573631-46573796)
chr7 (74-239)||(18250012-18250177)
chr7 (74-239)||(18740237-18740402)
chr7 (76-239)||(33898963-33899126)
chr7 (74-239)||(21760602-21760767)
chr7 (85-239)||(17025380-17025534)
chr7 (74-239)||(26719776-26719941)
chr7 (74-239)||(32356922-32357087)
chr7 (74-237)||(49034245-49034408)
chr7 (75-236)||(31491777-31491938)
chr7 (85-239)||(35543575-35543726)
chr7 (76-239)||(33019265-33019427)
chr7 (74-205)||(30919383-30919514)
chr7 (76-238)||(29037800-29037962)
chr7 (85-239)||(36472411-36472565)
chr7 (172-239)||(33935567-33935634)
chr7 (175-239)||(37334340-37334404)
chr7 (171-251)||(41449798-41449878)
[»] scaffold0002 (1 HSPs)
scaffold0002 (86-233)||(96248-96395)
[»] chr6 (10 HSPs)
chr6 (74-235)||(7437260-7437421)
chr6 (85-239)||(3081737-3081891)
chr6 (74-239)||(18095475-18095640)
chr6 (132-239)||(17441172-17441279)
chr6 (76-239)||(13311980-13312145)
chr6 (85-239)||(18099783-18099937)
chr6 (86-239)||(1501816-1501969)
chr6 (86-239)||(4441320-4441473)
chr6 (187-236)||(6999336-6999385)
chr6 (175-239)||(8200688-8200752)
[»] scaffold0171 (1 HSPs)
scaffold0171 (109-239)||(21079-21208)
[»] chr2 (15 HSPs)
chr2 (85-239)||(40458888-40459042)
chr2 (88-239)||(11006993-11007142)
chr2 (86-251)||(24844673-24844838)
chr2 (75-239)||(10412397-10412561)
chr2 (73-235)||(32713019-32713181)
chr2 (171-229)||(31000893-31000951)
chr2 (88-232)||(12070540-12070684)
chr2 (82-214)||(13829842-13829974)
chr2 (78-194)||(37314074-37314190)
chr2 (160-239)||(27464591-27464670)
chr2 (74-184)||(1094413-1094523)
chr2 (171-239)||(3409207-3409275)
chr2 (79-214)||(2328335-2328470)
chr2 (187-239)||(29806975-29807027)
chr2 (87-239)||(34116192-34116344)
[»] chr8 (5 HSPs)
chr8 (98-235)||(1091707-1091844)
chr8 (171-239)||(43384847-43384915)
chr8 (73-237)||(22563961-22564125)
chr8 (171-235)||(12378405-12378469)
chr8 (171-239)||(39478103-39478171)
[»] scaffold0444 (1 HSPs)
scaffold0444 (85-199)||(826-940)
[»] scaffold0063 (1 HSPs)
scaffold0063 (122-233)||(51327-51438)
[»] scaffold0223 (1 HSPs)
scaffold0223 (89-239)||(14397-14547)
[»] scaffold0135 (1 HSPs)
scaffold0135 (85-239)||(32804-32956)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 48731085 - 48730841
Alignment:
Q  10 aagaatatcggaatgatttttaaaaagacatgttatatggttataaaagtctatgttgaaacgttatcgagttgattcatgaaccaaacgaatcgaacta 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  48731085 aagaatatcggaatgatttttaaaaagacatgttatatggttatcaaagtttatgttgaaacgttatcgagttgattcatgaattaaacgaatcgaacta 48730986  T
Q  110 tacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacgaattaattagcaa 209  Q
    ||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  48730985 tacttaatttatgttcaactcatttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatcaagtttaacgaattaattagcaa 48730886  T
Q  210 atcgaatctcgaactattttcgagttggttgggataattgtccct 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  48730885 atcgaatctcgaactattttcgagttggttgggataattgtccct 48730841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 12710658 - 12710823
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || |||||||||||||||| |||||| ||||| | || | |||| |||| |||||||| |||| ||||||||  ||| ||||| |||| |||    
T  12710658 tatcgagctggttcatgaaccaaacgagtcgaaccatactcaactcaagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatt 12710757  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||  ||||||||||| | ||||| | |||||||||||||||||||||||||||||||    
T  12710758 tggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggtt 12710823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 30662304 - 30662150
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||||||||| | || | |||| |||| |||||||| |||| ||||||||  ||| ||||| |||| ||||| ||||||||    
T  30662304 ttcatgaaccaaacgagtcgaactatactcaactcaagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatttgattcatgaa 30662205  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
      ||||||||||| | ||||| | ||||||||||| |||||||||||||||||||    
T  30662204 ccaagttcaacgagtcaattatcgaatcgaatctcaaactattttcgagttggtt 30662150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 239
Target Start/End: Original strand, 40943519 - 40943682
Alignment:
Q  76 tcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttg 175  Q
    ||||| || |||||||||||||||| |||||| ||||| || | | ||||||||| |||||||| |||| ||||||||  ||| ||||| |||| |||||    
T  40943519 tcgagctggttcatgaaccaaacgagtcgaaccatactaagttcaagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttg 40943618  T
Q  176 gttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||  |||| ||| |||  ||||| |||||||| | ||||||||||||||||||||||    
T  40943619 gttcatgaaccaagtccaatgaaccaattatcaaatcgagtatcgaactattttcgagttggtt 40943682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 239
Target Start/End: Complemental strand, 20550384 - 20550221
Alignment:
Q  76 tcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttg 175  Q
    ||||| || |||||||| ||||||| |||||| |||||||| | | || |||||| |||||||| ||| |||||||||  ||| | ||| |||| |||||    
T  20550384 tcgagctggttcatgaatcaaacgagtcgaaccatacttagttcaagtacaactcatttatttaacgaatttaattttcaactcatgttcgactcatttg 20550285  T
Q  176 gttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||| ||||  ||||||||| ||| ||||| | |||||| | ||||||||||||||||||||||    
T  20550284 gttcgtgaaccaagttcaacaaatcaattatcgaatcgagtatcgaactattttcgagttggtt 20550221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 239
Target Start/End: Complemental strand, 26049712 - 26049559
Alignment:
Q  86 tcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaat 185  Q
    ||||||||| |||||||||||  ||||| | || | |||| |||  |||||||| |||| ||||||||  ||| ||||| |||| ||||| ||||||||     
T  26049712 tcatgaacctaacgaatcgaatcatactcaactcaagttcgactaatttatttaacgagcttaattttcaactcaagttcgactcatttgattcatgaac 26049613  T
Q  186 gaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
     |||||||||   | ||||| | ||||||||||| |||||||||||||||||||    
T  26049612 caagttcaacaggtcaattatcgaatcgaatctcaaactattttcgagttggtt 26049559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 251
Target Start/End: Original strand, 26136289 - 26136466
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| ||| ||||||||||||||| || |||||||  ||| ||||||||||||| ||| |||| | |   |||||||| ||| ||||| | || | |    
T  26136289 tatcgagctgactcatgaaccaaacgagtcaaactatatgtagtttatgttcaactcatttgtttaacaaacataattttgaactcaagttcggctcact 26136388  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggttgggataattgtc 251  Q
    | |||||| ||  ||||||||| || |||||| | |||||| |||| ||||||| || ||||||||||| | ||||||    
T  26136389 tagttcataaaccaagttcaacaaactaattaacgaatcgagtctcaaactattatcaagttggttgggttcattgtc 26136466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 239
Target Start/End: Complemental strand, 9505293 - 9505140
Alignment:
Q  86 tcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaat 185  Q
    ||||||||||| |||| |||||||||  || || | ||||| ||| |||||||| |||  ||||||||   || |||||  ||| ||||||||||||||     
T  9505293 tcatgaaccaaccgaaccgaactatatatatctcaagttcagctcatttatttaacgaacttaattttcagctcaagttcaactcatttggttcatgaac 9505194  T
Q  186 gaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
     ||||||||||| ||||||  | |||||| |  ||||||||| |||||||||||    
T  9505193 caagttcaacgagttaattgtcgaatcgagttccgaactattgtcgagttggtt 9505140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 54432373 - 54432265
Alignment:
Q  76 tcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttg 175  Q
    ||||| || |||||||||||||||| ||||||  |||| || | | ||||||||| |||||||| |||| ||||||||  ||| ||||| |||| ||||     
T  54432373 tcgagctggttcatgaaccaaacgagtcgaaccgtactaagttcaagttcaactcatttatttaacgagcttaatttttaactcaagttcgactcattta 54432274  T
Q  176 gttcatgaa 184  Q
    |||||||||    
T  54432273 gttcatgaa 54432265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 18074629 - 18074695
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttgg 237  Q
    |||| |||||||||  || |||||||||||||||| |||||||| ||||||||| | ||||||||||    
T  18074629 atttagttcatgaaacaaattcaacgaattaattatcaaatcgagtctcgaactctattcgagttgg 18074695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 31589626 - 31589743
Alignment:
Q  122 gttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcga 221  Q
    ||||||| |||||||||| | |  ||||||||  ||| ||||||||||||||||||| |||||  |||| ||| ||||| |||| | |||| ||| | ||    
T  31589626 gttcaacccgtttatttaacaaacttaattttcaactcaagtttgacttatttggtttatgaaccaagtccaatgaattgattaccgaatcaaattttga 31589725  T
Q  222 actattttcgagttggtt 239  Q
    | |||||| |||||||||    
T  31589726 attattttggagttggtt 31589743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 49026575 - 49026640
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttattta 139  Q
    ||||| |||| |||||||||||||||| |||||| ||| |||| | | ||||||||||||||||||    
T  49026575 tatcgggttggttcatgaaccaaacgagtcgaaccatatttagttcaagttcaactcgtttattta 49026640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 52199483 - 52199550
Alignment:
Q  172 tttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||||  ||||||||||||||||||  | |||||| || | ||||||| |||||||||||    
T  52199483 tttggttcatgaaccaagttcaacgaattaattgtcgaatcgagtcccaaactattgtcgagttggtt 52199550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 237
Target Start/End: Complemental strand, 15822528 - 15822370
Alignment:
Q  79 agttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggtt 178  Q
    ||||| |||||||| ||||||| || || ||||| ||  | | ||||  ||| |||||||  |||| ||||||||  ||| |||||  ||| | |||| |    
T  15822528 agttggttcatgaatcaaacgagtctaattatacgtaattcaagttcggctcatttatttgacgagcttaattttcaactcaagttctactcaattggat 15822429  T
Q  179 catgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttgg 237  Q
    ||||||  ||||||||||||  ||||| | |||||||| ||||||||||||||| ||||    
T  15822428 catgaaccaagttcaacgaaacaattaccgaatcgaatttcgaactattttcgaattgg 15822370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 46293385 - 46293287
Alignment:
Q  86 tcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||||||||||||   ||| ||| ||||||||| |||| ||| |||  ||||||||   || ||||| | || ||||||||||||||    
T  46293385 tcatgaaccaaacgaatcgaactatttatagtttaagttcaactcatttaattaacgaacttaattttcagctcaagttcggctcatttggttcatgaa 46293287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 38061351 - 38061197
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||| ||| |||| | | ||||||||| |||||||| |||| ||||||||  ||||||||| |||| ||| ||||||| ||    
T  38061351 ttcatgaaccaaacgagtcgaaccatatttagttcaagttcaactcatttatttaacgagcttaattttaaacttaagttcgactcattaggttcataaa 38061252  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    | ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  38061251 tcaagttcaacgaatcaattatcaaatcgaatctcgcactattttcgagttggtt 38061197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 47983222 - 47983376
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||| ||||||| |||| ||||||||| |||||||| ||||||||  |||  ||| ||||| |||| ||||||||| ||||    
T  47983222 ttcatgaaccaaacgagtcgaaccatacttaacttaagttcaactcatttatttaacgagtttagattttaactcaagttcgactcatttggttcgtgaa 47983321  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
      ||||||||| ||| ||||| | |||||||||||||||||||||||||||||||    
T  47983322 ccaagttcaacaaatcaattatcgaatcgaatctcgaactattttcgagttggtt 47983376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 28006306 - 28006471
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || ||||||||| |||||| |||||| ||||| | || | |||| |||| |||||||| |||| ||||||||  ||| ||||| |||| |||    
T  28006306 tatcgagctggttcatgaactaaacgagtcgaaccatactcaactcaagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatt 28006405  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||  ||||||||||| | ||||| | |||||||||||||||||||||||||||||||    
T  28006406 tggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggtt 28006471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 29677703 - 29677538
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    |||||||||| |||||||| ||||||| ||||||||||||||| | | ||||| ||| ||||||||  ||| ||||||||  ||| ||||| |||| |||    
T  29677703 tatcgagttggttcatgaagcaaacgagtcgaactatacttagttcaagttcagctcatttatttaaagagcttaattttcaactcaagttcgactcatt 29677604  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||| ||||  ||||||||||||  ||||| |||||||| | ||||||||||||||||||||||    
T  29677603 tggttcgtgaaccaagttcaacgaaccaattatcaaatcgagtatcgaactattttcgagttggtt 29677538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 239
Target Start/End: Complemental strand, 39802952 - 39802786
Alignment:
Q  73 ttatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttat 172  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||| | ||||  ||| |||||||| |||  ||||||||  ||| ||||| |||| ||    
T  39802952 ttatcgagttgactcatgaaccaaacgaatcgagctatacatagctcaagttcggctcatttatttaacgaacttaattttcaactcaagttcgactcat 39802853  T
Q  173 ttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||||  | |||||||||||||| |  | || ||| ||||||||||||||||||||||||    
T  39802852 ttggttcatgaaccatgttcaacgaattaactgccgaaccgagtctcgaactattttcgagttggtt 39802786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 5204653 - 5204488
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || |||||||||||||||| |||||| ||||| |  | | |||| |||| |||||||| |||  ||||||||  ||| ||||| |||| |||    
T  5204653 tatcgagctggttcatgaaccaaacgagtcgaaccatactcaattcaagttcgactcatttatttaacgaacttaattttcaactcaagttcgactcatt 5204554  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||| |||  ||||||||||| | ||||| | ||||||||||| |||||||||||||||||||    
T  5204553 tggttcacgaaccaagttcaacgagtcaattatcgaatcgaatctcaaactattttcgagttggtt 5204488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 7995948 - 7996092
Alignment:
Q  95 aaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaa 194  Q
    |||||| |||||| |||||||  | | ||| | ||| |||||||| |||| ||||||||  ||||||||| |||| ||| |||| |||||  ||||||||    
T  7995948 aaacgagtcgaaccatacttaattcaagttgagctcatttatttaacgagcttaattttaaacttaagttcgactcattaggtttatgaaccaagttcaa 7996047  T
Q  195 cgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||| ||||| | |||||||||||||||||||||| ||||||||    
T  7996048 cgaatcaattatcgaatcgaatctcgaactattttcaagttggtt 7996092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 239
Target Start/End: Complemental strand, 40159812 - 40159649
Alignment:
Q  76 tcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttg 175  Q
    ||||| || |||||||||||||||| |||||| ||||| || | | ||||||||| |||||||| |||  ||||||||  ||| ||||| |||| |||||    
T  40159812 tcgagctggttcatgaaccaaacgagtcgaaccatactaagttcaagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttg 40159713  T
Q  176 gttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
     ||||||||  |||| ||| |||  ||||| | |||||||| || |||||||||||||||||||    
T  40159712 attcatgaaccaagtccaatgaaccaattatcgaatcgaatatcaaactattttcgagttggtt 40159649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 6413292 - 6413360
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||||||  | ||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  6413292 atttggttcatgaaccaggttcaacgaatcaattatcaaatcgaatctcgaactattttcgagttggtt 6413360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 31816524 - 31816689
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||||||  || |||||||||||| ||||| ||| | || || | ||||  ||| |||||||  |||| ||||||||  ||| |||||  ||| |||    
T  31816524 tatcgagttgtctcgtgaaccaaacgagtcgaattatccataactcaagttcggctcatttatttgacgagcttaattttcgactgaagttcaactcatt 31816623  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||  ||||||||||||| ||||| | ||| || | ||||||||||||||||||||||    
T  31816624 tggttcatgaaccaagttcaacgaatcaattaccgaattgagtttcgaactattttcgagttggtt 31816689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 45581191 - 45581027
Alignment:
Q  75 atcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttattt 174  Q
    ||||||||  || ||||||||||||| |||||| |||  ||||| ||||||| ||| |||| |||  ||  |||||||| | || |||||  ||| ||||    
T  45581191 atcgagttagtttatgaaccaaacgagtcgaaccatatatagctaatgttcatctcatttagttaatgaacttaattttccgctcaagttcaactcattt 45581092  T
Q  175 ggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||  |||||||||||  |||||| | |||||| | ||||||||||||| ||||||||    
T  45581091 ggttcatgaaccaagttcaacgagataattatcgaatcgagtttcgaactattttcaagttggtt 45581027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 50447308 - 50447462
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| ||||   | || ||| | | ||||||||| |||||||| |||  ||||||||    | ||||| | || ||||||||||| ||    
T  50447308 ttcatgaaccaaacgagtcgagtcaaacatagttcaagttcaactcatttatttaacgaacttaattttaagttcaagttcggctcatttggttcataaa 50447407  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
      ||||| ||||||||||||| | |||||| ||||||||||||||||||||||||    
T  50447408 ccaagtttaacgaattaattatcgaatcgagtctcgaactattttcgagttggtt 50447462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 24575913 - 24576030
Alignment:
Q  122 gttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcga 221  Q
    |||| |||| |||||||| | || ||||||||  ||| ||||| |  | ||||||||||||||  ||||||||||| | ||||| | |||| ||||||||    
T  24575913 gttcgactcatttatttaacaagcttaattttcaactcaagttcgtttcatttggttcatgaaccaagttcaacgagtcaattatcgaatcaaatctcga 24576012  T
Q  222 actattttcgagttggtt 239  Q
    ||||||||||||||||||    
T  24576013 actattttcgagttggtt 24576030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 7841676 - 7841743
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||||||  ||||||||||||||||||| | |||||| ||||||| ||||||||||||||||    
T  7841676 atttggttcatgaaccaagttcaacgaattaattatcgaatcgagtctcgaa-tattttcgagttggtt 7841743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 48575247 - 48575103
Alignment:
Q  91 aaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagt 190  Q
    |||||||||  |||||||||||||| || | ||||||||| |||||||  |||  ||||||||  | | ||||| || |  |||||||||||||  ||||    
T  48575247 aaccaaacgggtcgaactatacttaactcaagttcaactcatttatttgacgaacttaattttaaattcaagttcgattcgtttggttcatgaaccaagt 48575148  T
Q  191 tcaacgaattaattagcaaatcgaatctcgaactattttcgagtt 235  Q
    ||||||||||||||| | ||| || ||||  ||||||||||||||    
T  48575147 tcaacgaattaattaccgaattgagtctcatactattttcgagtt 48575103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 15257341 - 15257190
Alignment:
Q  88 atgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatga 187  Q
    ||||||||||||| |||||  ||||| || | |  |||||||| |||||||| |||| ||||||||  ||| ||||| |||| ||||||||||||||  |    
T  15257341 atgaaccaaacgagtcgaatcatactaagttcaaattcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaacca 15257242  T
Q  188 agttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||| ||| |||  ||||| | |||||| | || ||||||||| |||||||||    
T  15257241 agtccaatgaaccaattatcgaatcgagtatcaaactatttttgagttggtt 15257190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 7956291 - 7956445
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||  ||||| || | | ||||||||| |||||||| | || ||||||||  | | ||||| |||| |||| |||||||||    
T  7956291 ttcatgaaccaaacgagtcgaatcatactaagttcaagttcaactcatttatttaacaagcttaattttcaattcaagttcgactaattttgttcatgaa 7956390  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
      |||| ||| |||  ||||| | ||| || | ||||||||||||||||||||||    
T  7956391 ccaagtccaatgaaccaattatcgaattgagtatcgaactattttcgagttggtt 7956445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 27076699 - 27076534
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || |||||||||||||||||| ||   | || ||| | | |||||||||||||||||| |||  |||| ||||  || ||||| | || |||    
T  27076699 tatcgagatggttcatgaaccaaacgaattgagtcaaacatagttcaagttcaactcgtttatttaacgaacttaactttgagctcaagttcggctcatt 27076600  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    | ||||||| |  ||||||||||||||||||| | |||| | |||  |||||||||| ||||||||    
T  27076599 tagttcatggaccaagttcaacgaattaattatcgaatcaagtcttaaactattttcaagttggtt 27076534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 12224662 - 12224594
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||||||  ||||||||||| ||||||  | ||||||||  ||||||||| |||||||||||    
T  12224662 atttggttcatgaaccaagttcaacgagttaattgtcgaatcgaattccgaactattgtcgagttggtt 12224594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 25124972 - 25124904
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||||||  ||||||||||||| ||||| ||||||||||  |||||| |  |||||||||||    
T  25124972 atttggttcatgaaccaagttcaacgaatcaattatcaaatcgaattacgaactttaatcgagttggtt 25124904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 45653518 - 45653451
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggt 238  Q
    ||||||||||||||  |||||||||||| |||||  | |||||| | | |||||||||||||||||||    
T  45653518 atttggttcatgaaccaagttcaacgaaataattgtcgaatcgagttttgaactattttcgagttggt 45653451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 15014343 - 15014436
Alignment:
Q  146 ttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||  ||| ||||| | || ||||||||||||||| |||||| |||||| ||||| | ||||||||  |||||| |  |||||||||||    
T  15014343 ttaattttcaactcaagttcggctcatttggttcatgaatcaagttcgacgaatcaattatcgaatcgaattacgaactctaatcgagttggtt 15014436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 239
Target Start/End: Original strand, 15306461 - 15306614
Alignment:
Q  86 tcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaat 185  Q
    ||||||||||| ||| ||||||||||   |||| | ||||  ||| ||||||||  ||  |||||||| | || |||||   || ||||||||||||||     
T  15306461 tcatgaaccaatcgagtcgaactatatacagctcaagttcggctcatttatttaatgaacttaattttccgctcaagttcagctcatttggttcatgaac 15306560  T
Q  186 gaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
     |||||||| |||||||||| | |||||| |  ||||||||| || ||||||||    
T  15306561 caagttcaatgaattaattatcgaatcgagttccgaactattgtcaagttggtt 15306614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 26298278 - 26298432
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||| ||| |||| ||| ||||||||| |||||||| |||| ||||||||  ||| |||||||||| ||| ||||||||||    
T  26298278 ttcatgaaccaaacgagtcgaaccatatttagtttaagttcaactcatttatttaacgagcttaattttaaactcaagtttgactcattaggttcatgaa 26298377  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    | ||||||||||||| ||||| | |||||||||||  |||||||| |||||||||    
T  26298378 tcaagttcaacgaatcaattatcgaatcgaatctcacactatttttgagttggtt 26298432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 26299814 - 26299968
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||| ||||||| |||||| ||| |||| | | |||||| || |||||||| |||| ||||||||  ||| |||||||||| ||| ||||||||||    
T  26299814 ttcatgaatcaaacgagtcgaaccatatttagttcaagttcaattcatttatttaacgagcttaattttaaactcaagtttgactcattaggttcatgaa 26299913  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||||||| ||||| | |||||||||||| ||||||||||||||||||    
T  26299914 tgaagttcaacgaatcaattatcgaatcgaatctcgcactattttcgagttggtt 26299968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 39407373 - 39407527
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||| ||| |||| | | ||||||||| |||||||| |||| ||||||||  ||| ||||| |||| ||| ||||||||||    
T  39407373 ttcatgaaccaaacgagtcgaaccatatttagttcaagttcaactcatttatttaacgagcttaattttaaactcaagttcgactcattaggttcatgaa 39407472  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    | ||||||||||||| ||||| | |||||||||||| |||||||| |||||||||    
T  39407473 tcaagttcaacgaatcaattatcgaatcgaatctcgcactatttttgagttggtt 39407527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 27450754 - 27450600
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||| | | |||| | | ||||||||| |||||||| |||| ||||||||  ||| ||||| |||| ||| ||||||||||    
T  27450754 ttcatgaaccaaacgagtcgaaccacatttagttcaagttcaactcatttatttaacgagcttaattttaaactcaagttcgactcattaggttcatgaa 27450655  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    | || |||||||||| ||||| | |||||||||||| ||||||||||||||||||    
T  27450654 tcaaattcaacgaatcaattatcgaatcgaatctcgcactattttcgagttggtt 27450600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 34719830 - 34719676
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||| ||| |||| | | ||||||||| |||||||| |||| ||||||||  ||| ||||| |||| |||  |||||||||    
T  34719830 ttcatgaaccaaacgagtcgaaccatatttagttcaagttcaactcatttatttaacgagcttaattttaaactcaagttcgactcattaagttcatgaa 34719731  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    | ||||||||||||| ||||| | |||| ||||||| ||||||||||||||||||    
T  34719730 tcaagttcaacgaatcaattatcgaatcaaatctcgcactattttcgagttggtt 34719676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 10327886 - 10328051
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||||||  |||||||| |||||| ||||||||||| ||||| | ||| || || ||||||| ||||||||||| ||  ||| |||||||| | |||    
T  10327886 tatcgagttggctcatgaacaaaacgagtcgaactatacatagctcaagtttaattcatttatttgtcgagtttaatattcgactcaagtttgattcatt 10327985  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||| ||||||||||||| ||||| | |||||| | | |||| |||||||||||||||    
T  10327986 tggttcatgaatcaagttcaacgaatcaattaccgaatcgagttttgaacaattttcgagttggtt 10328051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 27196033 - 27196198
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || ||||||||||| |||| |||||  |||||||||| | ||||||||| ||||| || |||| ||||||||  ||| ||||| |||| |||    
T  27196033 tatcgagctggttcatgaaccagacgagtcgaatcatacttagctcaagttcaactcctttatctaacgagcttaattttcaactcaagttcgactcatt 27196132  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||  || || ||||||| ||||| | |||||| ||||||||||||||||||||||||    
T  27196133 tggttcatgaaccaaatttaacgaatcaattatcgaatcgagtctcgaactattttcgagttggtt 27196198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 19716150 - 19716299
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| || ||| ||| |||| | | |||||| || |||||||| |||| ||||||||  ||||||||| |||| ||| ||||||||||    
T  19716150 ttcatgaaccaaacgagtcaaaccatatttagttcaagttcaattcatttatttaacgagcttaattttaaacttaagttcgactcattaggttcatgaa 19716249  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    | ||||||||||||| ||||     ||||||||||| ||||||||||||||||||    
T  19716250 tcaagttcaacgaatcaatt-----atcgaatctcgcactattttcgagttggtt 19716299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 34857314 - 34857468
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||| ||| |||| ||| ||| ||||| |||||||| |||| ||||||||  ||| ||||| |||| ||| | ||||||||    
T  34857314 ttcatgaaccaaacgagtcgaaccatatttagtttaagtttaactcatttatttaacgagcttaattttaaactcaagttcgactcattagattcatgaa 34857413  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    | ||||||||||||| |||||   ||| |||||||  ||||||||||||||||||    
T  34857414 tcaagttcaacgaatcaattattgaattgaatctcacactattttcgagttggtt 34857468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 10493945 - 10494106
Alignment:
Q  78 gagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggt 177  Q
    |||||| |||||||||||||||| ||||||||||||||| | | ||||| ||| |||||||| |||| ||||||||  ||| ||||| |||| |||||||    
T  10493945 gagttggttcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttatttaacgagcttaattttcaactcaagttcgactcatttggt 10494044  T
Q  178 tcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |  ||||  ||||||||||||  |||||   |||||||| || ||||||||| |||||||||    
T  10494045 ttgtgaaccaagttcaacgaaccaattattgaatcgaatatcaaactatttttgagttggtt 10494106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 34724890 - 34724773
Alignment:
Q  122 gttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcga 221  Q
    ||||||||| |||||||| |||| ||||||||  ||| ||||| |||| ||| ||||||||||| ||||||||||||| ||||| |||||||||||||      
T  34724890 gttcaactcatttatttaacgagcttaattttaaactcaagttcgactcattaggttcatgaatcaagttcaacgaatcaattatcaaatcgaatctcac 34724791  T
Q  222 actattttcgagttggtt 239  Q
    ||||||||| ||||||||    
T  34724790 actattttcaagttggtt 34724773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 34723826 - 34723706
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||| ||| |||| | | ||||||||| |||||||| |||| ||||||||  ||| || || |||| ||| ||||||||||    
T  34723826 ttcatgaaccaaacgagtcgaaccatatttagttcaagttcaactcatttatttaacgagcttaattttaaactcaaattcgactcattaggttcatgaa 34723727  T
Q  185 tgaagttcaacgaattaatta 205  Q
    | ||||||||||||| |||||    
T  34723726 tcaagttcaacgaatcaatta 34723706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 3457783 - 3457951
Alignment:
Q  75 atcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgc----acttaagtttgactt 170  Q
    |||||||||  ||||||||||||||| ||  ||||||  ||||| | || |||||| |||||||| |||  ||||||||      ||| ||||| || |     
T  3457783 atcgagttggctcatgaaccaaacgagtcagactatatatagctcaagtccaactcatttatttaacgaacttaatttttatttaactcaagttcgattc 3457882  T
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||| ||||  ||||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  3457883 atttggttcaagaatcgagttcaacgaactaattaccaaatcgaatctcaaactattttcgagttggtt 3457951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 32945205 - 32945040
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||||||  |||||||| |||||| | ||||||| | || ||   ||||  ||| |||||||  |||| ||||||||  ||| ||||| |||| |||    
T  32945205 tatcgagttgtctcatgaacaaaacgagttgaactatgcataactccagttcggctcatttatttgacgagcttaatttttgactcaagttcgactcatt 32945106  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||  ||||| ||||||| ||||| | |||||| | ||||||||||||||||||||||    
T  32945105 tggttcatgaaccaagtttaacgaatcaattaccgaatcgagtttcgaactattttcgagttggtt 32945040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 5382911 - 5382844
Alignment:
Q  172 tttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||||| ||||||||||||||||||| | |||||| ||||||||| ||||| ||||||||    
T  5382911 tttggttcatgaatcaagttcaacgaattaattaccgaatcgagtctcgaactcttttcaagttggtt 5382844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 39409107 - 39409207
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||| ||| |||| | | ||||||||| |||||||| |||| ||||||||  ||| ||||| |||| ||| ||||||||||    
T  39409107 ttcatgaaccaaacgagtcgaaccatatttagttcaagttcaactcatttatttaacgagcttaattttaaactcaagttcgactcattaggttcatgaa 39409206  T
Q  185 t 185  Q
    |    
T  39409207 t 39409207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 28246687 - 28246799
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagctt-atgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttat 172  Q
    ||||||| || |||||||||||||||| |||||  |||||||  || | ||||||||| ||||||||  ||||||||||||  ||| ||||| |||| ||    
T  28246687 tatcgagctggttcatgaaccaaacgagtcgaatcatacttaagttcaagttcaactcatttatttaatgagtttaattttcaactcaagttcgactcat 28246786  T
Q  173 ttggttcatgaat 185  Q
    ||||||| |||||    
T  28246787 ttggttcgtgaat 28246799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 1225307 - 1225449
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||||||  ||||||||||||||| ||||| ||||| ||| | | ||||   || |||||||  |||| ||||||||  ||| ||||| |||| |||    
T  1225307 tatcgagttggctcatgaaccaaacgagtcgaattatacgtagttcaagttcggttcatttatttgacgagcttaattttcaactcaagttcgactcatt 1225406  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaat 216  Q
    |||||||| ||  ||||||||||||  ||||| | ||||||||    
T  1225407 tggttcataaactaagttcaacgaaacaattatcgaatcgaat 1225449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 36523707 - 36523772
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttattta 139  Q
    ||||||| || ||||||||||||||||||| |||||||| ||||| | ||||| ||| ||||||||    
T  36523707 tatcgagctggttcatgaaccaaacgaatcaaactatacatagctcaagttcagctcatttattta 36523772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 28247479 - 28247531
Alignment:
Q  187 aagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||||| ||||| |||||| ||| ||||||||||||||| ||||||    
T  28247479 aagttcaacgaatcaattatcaaatcaaatatcgaactattttcgaattggtt 28247531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 24535963 - 24536128
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || ||||||| |||||| | |||| | | || ||| |||  ||||||||||||||||| |||  |||||||||  || || |||  || |||    
T  24535963 tatcgagctggttcatgatccaaactagtcgagccaaacatagtttaaattcaactcgtttatttaacgaacttaattttgagctcaaatttagctcatt 24536062  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    || ||||||||  |  |||||| ||||||||| |||||  | ||| ||||||||||| ||||||||    
T  24536063 tgattcatgaaccagattcaacaaattaattatcaaattaagtcttgaactattttcaagttggtt 24536128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 40056454 - 40056382
Alignment:
Q  167 acttatttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||||||||||  || ||||||||  |||||  | |||||||| || ||||||| |||||||||||    
T  40056454 acttatttggttcatgaaccaaattcaacgagataattgtcgaatcgaatttcaaactattatcgagttggtt 40056382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 24008076 - 24007922
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||| ||| |||||| | ||||||||| |||||||| |||  ||||||||  ||| |||||| |||  || ||||||||||    
T  24008076 ttcatgaaccaaacgagtcgaaccatatttagctcaagttcaactcatttatttaacgaacttaattttaaactcaagtttaactcgttaggttcatgaa 24007977  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
      ||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  24007976 ccaagttcaacgaatcaatcatcaaatcgaatctcgaactattttcgagttggtt 24007922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 12673201 - 12673047
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||| ||||| | || | |||| |||| ||||||||  ||| ||||||||  ||| ||||| |||| ||||||||||||||    
T  12673201 ttcatgaaccaaacgagtcgaaccatactcaactcaagttcgactcatttatttaatgagcttaattttcaactcaagttcgactcatttggttcatgaa 12673102  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
      ||||||||||| | ||||| | |||||||||||||||||||||||||||||||    
T  12673101 ccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggtt 12673047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 51995034 - 51995199
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || |||||||||||||||| ||||   | || ||| | | |||||||||||||||||| | |  |||||||||  || ||||| | || |||    
T  51995034 tatcgagctggttcatgaaccaaacgagtcgagtcaaacatagttcaagttcaactcgtttatttaacaaacttaattttgagctcaagttcggctcatt 51995133  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||  ||||||||||||||||||| | |||||| ||||||||||||||||||||||||    
T  51995134 tggttcatgaaccaagttcaacgaattaattatcgaatcgagtctcgaactattttcgagttggtt 51995199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 55892169 - 55892004
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || |||||||||||||||||| ||||||||||| ||| | ||||||||| ||| |||  |||  ||||||||  ||  | ||| ||||  ||    
T  55892169 tatcgagctggttcatgaaccaaacgaattgaactatacttggctcaagttcaactcatttgtttgacgaacttaattttaaacccaggttcgactcgtt 55892070  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||  ||||||||||||||||||| | |||||| |||||||||||||| |||||||||    
T  55892069 tggttcatgaaccaagttcaacgaattaattaccgaatcgagtctcgaactatttttgagttggtt 55892004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 13455705 - 13455822
Alignment:
Q  122 gttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcga 221  Q
    |||||||||||||||||| |||  |||||||||  || ||||| |||| ||||||||||| ||| ||||||||||||||||||| | ||||||||||| |    
T  13455705 gttcaactcgtttatttaacgaacttaattttgagctcaagttggactcatttggttcataaatcaagttcaacgaattaattatcgaatcgaatctcaa 13455804  T
Q  222 actattttcgagttggtt 239  Q
    | ||||||| ||||||||    
T  13455805 attattttcaagttggtt 13455822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 46944728 - 46944563
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || |||||||||||||||| |||||| ||||| | || | |||| |||  |||||||| |||| |||| |||  ||| ||||| |||| |||    
T  46944728 tatcgagctggttcatgaaccaaacgagtcgaaccatactcaactcaagttcgacttatttatttaacgagcttaaatttcaactcaagttcgactcatt 46944629  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||  |||||||||||   ||||| | ||||||||||||||||||||| |||||||||    
T  46944628 tggttcatgaaccaagttcaacgagccaattatcgaatcgaatctcgaactatttttgagttggtt 46944563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 80452 - 80616
Alignment:
Q  73 ttatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttat 172  Q
    |||||||| || |||||||||||||||| ||||| ||||| ||| | | ||||  ||| |||||||  |||| ||||||||  ||| ||||| |||| ||    
T  80452 ttatcgagctggttcatgaaccaaacgagtcgaattatacgtagttcaagttcggctcatttatttgacgagcttaattttcaactcaagttcgactcat 80551  T
Q  173 ttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttgg 237  Q
    ||||||||||||  ||||||||||||  ||||| | |||| ||| ||||||||||||||||||||    
T  80552 ttggttcatgaaccaagttcaacgaaacaattaccgaatcaaatttcgaactattttcgagttgg 80616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 239
Target Start/End: Original strand, 40797788 - 40797951
Alignment:
Q  76 tcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttg 175  Q
    ||||| || |||||||||||||||| |||||| ||||| || | | ||||||||| |||||||| |||| ||||||||  ||| ||||| |||| |||||    
T  40797788 tcgagctggttcatgaaccaaacgagtcgaaccatactaagttcaagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttg 40797887  T
Q  176 gttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||  |||||||| |||  ||||| | |||| | | |||||||||||| |||||||||    
T  40797888 gttcatgaaccaagttcaatgaaccaattatcgaatcaagtatcgaactatttttgagttggtt 40797951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 1803468 - 1803614
Alignment:
Q  88 atgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatga 187  Q
    ||||||||||||| |||||| ||| |||| | | ||||||||| |||||||| |||| ||||||||  ||| ||||| |||| ||| ||||||||||| |    
T  1803468 atgaaccaaacgagtcgaaccatatttagttcaagttcaactcatttatttaacgagcttaattttaaactcaagttcgactcattaggttcatgaatca 1803567  T
Q  188 agttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||| ||||||| ||||     ||||||||||| ||| ||||||||||||||    
T  1803568 agtttaacgaatcaatt-----atcgaatctcgcactcttttcgagttggtt 1803614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 48802660 - 48802494
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||||||  || |||||||||||| ||||||||| | ||||| | ||||  ||| |||||||  |||| ||||||||  ||| ||||| |||| |||    
T  48802660 tatcgagttgtctcgtgaaccaaacgagtcgaactattcatagctcaagttcggctcatttatttgacgagcttaattttcgactcaagttcgactcatt 48802561  T
Q  174 tggttcatgaatgaagttc-aacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||| |||||| ||  ||| ||| | |||||||| | ||||||||||||||||||||||    
T  48802560 tggttcatgaatcaagttcaaaaaaatcaataaccaaatcgagtttcgaactattttcgagttggtt 48802494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 34980636 - 34980523
Alignment:
Q  126 aactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaacta 225  Q
    ||||| |||||||| |||||||||||||  ||| ||||| || | ||||| ||||||||| |||||||| |||| ||||| | |||||| |||| |||||    
T  34980636 aactcatttatttagcgagtttaattttcaactcaagttcgattcatttgattcatgaatcaagttcaatgaatcaattatcgaatcgagtctcaaacta 34980537  T
Q  226 ttttcgagttggtt 239  Q
    ||||||||||||||    
T  34980536 ttttcgagttggtt 34980523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 28265759 - 28265692
Alignment:
Q  172 tttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||||  ||||||||||||||||||| | |||||| ||||||||||||||||||||||||    
T  28265759 tttggttcatgaaccaagttcaacgaattaattaccgaatcgagtctcgaactattttcgagttggtt 28265692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 51408110 - 51407968
Alignment:
Q  97 acgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacg 196  Q
    |||| ||||||||||||| | | | ||||||||| ||| |||  |||  ||||||||  ||  | ||| |||| ||||||||||||||  ||||| ||||    
T  51408110 acgagtcgaactatacttggttcaagttcaactcatttgtttgacgaacttaattttaaacccaggttcgactcatttggttcatgaaccaagttgaacg 51408011  T
Q  197 aattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||| | |||||| ||||||||||||||||||||||||    
T  51408010 aattaattaccgaatcgagtctcgaactattttcgagttggtt 51407968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 43798407 - 43798255
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| ||| ||||||||||||||| ||||||||||| ||||| | ||||||||| ||||||||  ||  || |||||  ||| ||| | |||| |||    
T  43798407 tatcgagctgactcatgaaccaaacgagtcgaactatacatagctcaagttcaactcatttatttaatgatcttcattttttactcaagctcgactcatt 43798308  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactat 226  Q
    ||||||| |||   |||||||||| ||||||| | |||||| |||| ||||||    
T  43798307 tggttcaagaaccgagttcaacgagttaattatcgaatcgagtctcaaactat 43798255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 199
Target Start/End: Original strand, 44378217 - 44378331
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    ||||||||||| |||| ||||| ||||||||||| | ||||||||| |||||||| |||| ||||||||  ||  || ||  ||| ||||||||||||||    
T  44378217 ttcatgaaccagacgagtcgaattatacttagctcaagttcaactcatttatttaacgagcttaattttcaacccaaattcaactcatttggttcatgaa 44378316  T
Q  185 tgaagttcaacgaat 199  Q
      |||||||||||||    
T  44378317 ccaagttcaacgaat 44378331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 25134541 - 25134640
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||| ||||| || | | ||||||||| |||||||| |||  ||||||||  ||| ||||| |||| ||||||||||||||    
T  25134541 ttcatgaaccaaacgagtcgaaccatactaagttcaagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaa 25134640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 22721296 - 22721445
Alignment:
Q  86 tcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaat 185  Q
    ||||||||||||||| ||||||||||  || || | ||||||||| |||||||| |||  ||||||||   |||||||||| ||  |||||||||||||     
T  22721296 tcatgaaccaaacgagtcgaactatatataactcaagttcaactcatttatttaacgaacttaatttt-agcttaagtttgcctcgtttggttcatgaac 22721394  T
Q  186 gaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttg 236  Q
     |||||||| ||| |||||| | |||||| |  |||||| | |||||||||    
T  22721395 caagttcaatgaactaattaccgaatcgagttccgaactttattcgagttg 22721445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 49405804 - 49405654
Alignment:
Q  89 tgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaa 188  Q
    |||| ||||||| ||||||||| | || || | ||||  ||| |||||||  |||| ||||||||  | | ||||| |||| ||||||||||| ||  ||    
T  49405804 tgaatcaaacgagtcgaactatccataactcaagttcggctcatttatttgacgagcttaattttcgattcaagttcgactcatttggttcataaaccaa 49405705  T
Q  189 gttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||| ||||| | |||||| | |||||||||||||| |||||||    
T  49405704 gttcaacgaatcaattaccgaatcgagtttcgaactattttcgggttggtt 49405654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 9222303 - 9222151
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    ||||||||||| |||| |||||| ||||| || | | |||||| || |||||||| |||| |||||||   ||| ||||| |||| |||||||   ||||    
T  9222303 ttcatgaaccagacgagtcgaaccatactaagttcaagttcaattcatttatttaacgagcttaatttacaactcaagttcgactcatttggtg--tgaa 9222206  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
      ||||||||||||  ||||  | |||||| | ||||||||||||||||||||||    
T  9222205 ccaagttcaacgaaccaattgtcgaatcgagtatcgaactattttcgagttggtt 9222151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 28470865 - 28470939
Alignment:
Q  164 ttgacttatttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||| ||||||||||||||  ||||||||||||||||||| | |||||| | ||| ||| ||||||||||||||    
T  28470865 ttgactcatttggttcatgaaccaagttcaacgaattaattaccgaatcgagt-tcgtacttttttcgagttggtt 28470939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 15697255 - 15697105
Alignment:
Q  86 tcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaat 185  Q
    ||||||||||||||| ||| |||||  |||| | ||||||| ||| || | ||| |||  ||||||||   || |||||   ||||||||||||||||||    
T  15697255 tcatgaaccaaacgagtcggactatgtttagttcatgttcagctcattaagttaacgaacttaatttttagctcaagttcagcttatttggttcatgaat 15697156  T
Q  186 gaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttg 236  Q
     ||||||||||||| ||||  | | |||| ||||||||| | |||||||||    
T  15697155 caagttcaacgaatcaattgtcgagtcgagtctcgaactttattcgagttg 15697105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 39736691 - 39736801
Alignment:
Q  126 aactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaacta 225  Q
    |||||||||||||| | |  ||||||||  | | ||||| |||||||||||| | ||||  || |||||||||| ||||| | |||||| |||| |||||    
T  39736691 aactcgtttatttaacaaacttaatttttaattcaagttcgacttatttggtccgtgaaccaaattcaacgaatcaattatcgaatcgagtctcaaacta 39736790  T
Q  226 ttttcgagttg 236  Q
    |||||||||||    
T  39736791 ttttcgagttg 39736801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 239
Target Start/End: Complemental strand, 11055398 - 11055245
Alignment:
Q  86 tcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaat 185  Q
    ||||||||||| ||| ||||||||||   |||| | ||||  ||| |||||||| |||  |||||||| | || |||||   || ||||||||||||||     
T  11055398 tcatgaaccaatcgagtcgaactatatacagctcaagttcggctcatttatttaacgaacttaattttccgctcaagttcagctcatttggttcatgaac 11055299  T
Q  186 gaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
     |||||||| || ||||||| | |||||| |  ||||||||| |||||||||||    
T  11055298 caagttcaatgagttaattatcgaatcgagttccgaactattgtcgagttggtt 11055245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 19455245 - 19455184
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcga 232  Q
    ||||| ||||||||  ||||||||||||||||||  |||||||| | |||||||||||||||    
T  19455245 atttgattcatgaaccaagttcaacgaattaattgtcaaatcgagtttcgaactattttcga 19455184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 9874295 - 9874227
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||| |  || ||||||||||||||||   |||||||||| |||||||||| |||||||||    
T  9874295 atttggttcatgtaccaatttcaacgaattaattactgaatcgaatcttgaactatttttgagttggtt 9874227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 36644071 - 36644004
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||||||  |||||||| || ||||||| ||||| || |||||||||||||| |||||||||    
T  36644071 atttggttcatgaacaaagttcaatgagttaattatcaaat-gagtctcgaactattttggagttggtt 36644004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 7505533 - 7505616
Alignment:
Q  122 gttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacgaattaatta 205  Q
    ||||||||| |||| ||| ||| |||||||||   || ||||| | || ||||||||||||||| |||||||||||| ||||||    
T  7505533 gttcaactcatttagttaacgaatttaatttttagctcaagttcggctcatttggttcatgaatcaagttcaacgaactaatta 7505616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 239
Target Start/End: Original strand, 48977544 - 48977697
Alignment:
Q  86 tcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaat 185  Q
    ||||||||| ||||| ||||||||||  ||||| | ||||| ||| |||| ||| ||| |||||||||   || | ||    || ||| ||||||||||     
T  48977544 tcatgaaccgaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaatttaattttcagctcatgtccagctcattaggttcatgaac 48977643  T
Q  186 gaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||||||||| || | | |||||| ||||| |||  |||||||||||    
T  48977644 gaagttcaacgaattaaatatcgagtcgaatgtcgaattataatcgagttggtt 48977697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 49061762 - 49061702
Alignment:
Q  145 tttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacgaattaatta 205  Q
    |||||||||  |||||| ||  ||||||||| ||||||||| || ||||||||||||||||    
T  49061762 tttaattttcaacttaaattcaacttatttgattcatgaattaaattcaacgaattaatta 49061702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 46573796 - 46573631
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || |||||||||||||||| |||||| ||||| | || | |||| |||| |||||||| |||| ||||||||  ||||||||| |||| |||    
T  46573796 tatcgagctggttcatgaaccaaacgagtcgaaccatactcaactcaagttcgactcatttatttaacgagcttaattttcaacttaagttcgactcatt 46573697  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||  ||||||||||| | ||||| | |||||||||||||| |||||| |||||||||    
T  46573696 tggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaattatttttgagttggtt 46573631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 18250177 - 18250012
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || ||||||||||| |||| |||||  |||||||| | | ||||||||| |||||||| ||||  |||||||  ||| ||||| |||| |||    
T  18250177 tatcgagctggttcatgaaccagacgagtcgaatcatacttagttcaagttcaactcatttatttaacgagcataattttcaactcaagttcgactcatt 18250078  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||  ||||||||||||| ||||| | |||||| ||| ||||||||||||||||||||    
T  18250077 tggttcatgaaccaagttcaacgaatcaattatcgaatcgagtcttgaactattttcgagttggtt 18250012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 18740402 - 18740237
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || ||||||||| |||||| |||||| ||||| | || | |||| |||| |||||||| |||| ||||||||  ||| ||||| |||| |||    
T  18740402 tatcgagctggttcatgaactaaacgagtcgaaccatactcaactcaagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatt 18740303  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||  ||||| || || | ||||| |||||||||||||||||||||||||||||||||    
T  18740302 tggttcatgaaccaagtttaatgagtcaattatcaaatcgaatctcgaactattttcgagttggtt 18740237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 239
Target Start/End: Complemental strand, 33899126 - 33898963
Alignment:
Q  76 tcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttg 175  Q
    ||||| || |||||||||||||||| |||||| ||||| |  ||| ||||||||| |||||||| |||| ||||||||  ||| ||||| |||| |||||    
T  33899126 tcgagctggttcatgaaccaaacgagtcgaaccatactaaatttaagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttg 33899027  T
Q  176 gttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||  |||| ||| ||| |||||  | |||||||| ||||||||||||||||||||||    
T  33899026 gttcatgaaccaagtccaatgaactaattctcgaatcgaatatcgaactattttcgagttggtt 33898963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 21760767 - 21760602
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || |||||||| | ||||| |||||| ||||  |||| | ||||||||| |||||||| |||||||| ||||  ||| ||||| |||| |||    
T  21760767 tatcgagctggttcatgaatctaacgagtcgaaccatacgaagctcaagttcaactcatttatttaacgagtttagttttcaactcaagttcgactcatt 21760668  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||| ||||  ||||||||||||| ||||| | |||||| | ||||||||||||||||||||||    
T  21760667 tggttcgtgaacaaagttcaacgaatcaattatcgaatcgagtttcgaactattttcgagttggtt 21760602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 17025534 - 17025380
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    ||||||||| |||||| |||||| ||||| | || | |||| |||| |||||||| |||| ||||||||  ||| ||||| |||| ||||||||| ||||    
T  17025534 ttcatgaacaaaacgagtcgaaccatactcaactcaagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcgtgaa 17025435  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
      ||||||||||| | ||||| | ||||||| || ||||||||||||||||||||    
T  17025434 ccaagttcaacgagtcaattatcgaatcgaaccttgaactattttcgagttggtt 17025380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 26719776 - 26719941
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || |||||||| ||||||| |||||| ||||| || | | ||||||||| |||||||| |||  ||||||||  ||| ||||| |||| |||    
T  26719776 tatcgagctggttcatgaatcaaacgagtcgaaccatactaagttcaagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatt 26719875  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||  |||| ||| |||  ||||| | |||||| | ||||||||||||||||||||||    
T  26719876 tggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcgaactattttcgagttggtt 26719941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 32356922 - 32357087
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || ||||||||||||| || ||||  ||||| ||| ||| |||||||||||||| ||| |||  || |||||  ||| || || | || |||    
T  32356922 tatcgagctggttcatgaaccaaatgagtcgagttatacatagtttaagttcaactcgtttacttaacgaactttattttcaactcaaattcggctcatt 32357021  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    | |||||||||| ||||||||||||||||||| | |||||| ||||||||||||||  ||||||||    
T  32357022 tagttcatgaatcaagttcaacgaattaattatcgaatcgagtctcgaactatttttaagttggtt 32357087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 49034408 - 49034245
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    |||||||||| ||||| || |||| || ||||| ||||  ||| | | |||| |||| |||||||  |||| ||||||||  ||| ||||| |||| |||    
T  49034408 tatcgagttggttcataaatcaaatgagtcgaattatatgtagttcaagttcgactcatttatttgacgagcttaattttcaactcaagttcgactcatt 49034309  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttgg 237  Q
    |||||||||||  ||||||||||||  ||||| | |||||||| ||||||||||||||||||||    
T  49034308 tggttcatgaaccaagttcaacgaaacaattaccgaatcgaatttcgaactattttcgagttgg 49034245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 31491777 - 31491938
Alignment:
Q  75 atcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttattt 174  Q
    ||||||||| || ||||||||||| ||| || ||| || ||| | | ||||||||  |||||||| |||  ||||| |||   ||||||| |||| ||||    
T  31491777 atcgagttggtttatgaaccaaacaaattgagctaaacatagttcaagttcaactaatttatttaacgaacttaatattgagtttaagttcgactcattt 31491876  T
Q  175 ggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttg 236  Q
    ||||||||  | ||||||||||||||||||| | ||||||||||| ||||||||| ||||||    
T  31491877 ggttcatgtgtcaagttcaacgaattaattatcgaatcgaatctcaaactatttttgagttg 31491938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 35543726 - 35543575
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    ||||||||||| |||| |||||  |||||||| | | ||||||||| ||||||   |||| ||||||||  ||| ||||| |||| |||| |||||||||    
T  35543726 ttcatgaaccagacgagtcgaatcatacttagttcaagttcaactcatttatt---cgagcttaattttcaactcaagttcgactcatttagttcatgaa 35543630  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
      ||||||||||||| ||||| | ||| || |||| |||||||||||||||||||    
T  35543629 ccaagttcaacgaatcaattatcgaatggagtctcaaactattttcgagttggtt 35543575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 239
Target Start/End: Original strand, 33019265 - 33019427
Alignment:
Q  76 tcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttg 175  Q
    ||||| || |||||||||||||| | |||||||||| | || | |  |||||||  || ||||| |||||||||||||  ||| ||||| ||||||||||    
T  33019265 tcgagctggttcatgaaccaaacaagtcgaactatagtaagttcaaattcaacttatt-atttaacgagtttaattttcaactcaagttcgacttatttg 33019363  T
Q  176 gttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
     ||| ||||  ||||||||||||  ||||| | |||||| | |||||||||||| |||||||||    
T  33019364 attcgtgaaccaagttcaacgaaccaattatcgaatcgagtatcgaactatttttgagttggtt 33019427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 30919383 - 30919514
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || |||||||||| ||||| |||||| ||||  |||| | ||||||||| ||||| || |||||||| ||||  ||| ||||| |||| |||    
T  30919383 tatcgagctggttcatgaacctaacgagtcgaaccatacgaagctcaagttcaactcatttatctaacgagtttagttttcaactcaagttcgactcatt 30919482  T
Q  174 tggttcatgaatgaagttcaacgaattaatta 205  Q
    |||||| | ||  ||||||||||||| |||||    
T  30919483 tggttcgtaaaccaagttcaacgaatcaatta 30919514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 29037962 - 29037800
Alignment:
Q  76 tcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttg 175  Q
    ||||| ||| ||||||| ||||||| |||||| |||  ||| |||  |||||||| ||| |||| ||   ||||||||  ||| ||||| | || |||||    
T  29037962 tcgagctgactcatgaatcaaacgagtcgaaccatatatagtttaaattcaactcatttgtttaacggacttaattttcaactcaagttcgtctcatttg 29037863  T
Q  176 gttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggt 238  Q
    |||||||||  ||||||| | ||||||||| | |||||| |||| ||||||||||||| ||||    
T  29037862 gttcatgaacaaagttcagcaaattaattaccgaatcgagtctcaaactattttcgagctggt 29037800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 36472411 - 36472565
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| |||||| || ||  | | | ||||||||  |||||||| |||| ||||||||  ||| ||||| | || ||||||||||||||    
T  36472411 ttcatgaaccaaacgagtcgaaccatgctcggttcaagttcaacttatttatttaacgagcttaattttcaactcaagttcggctcatttggttcatgaa 36472510  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
      ||||||||||||| | ||| | |||||| | || |  ||||||||||||||||    
T  36472511 ccaagttcaacgaatcatttatcgaatcgagtatcaagttattttcgagttggtt 36472565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 33935567 - 33935634
Alignment:
Q  172 tttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||||  ||||||||||| ||||||| | |||||| || | ||||||| |||||||||||    
T  33935567 tttggttcatgaaccaagttcaacgagttaattatcgaatcgagtcccaaactattgtcgagttggtt 33935634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 37334340 - 37334404
Alignment:
Q  175 ggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||  |||||||||| ||||| || | |||||||| |||||||||  |||||||||||    
T  37334340 ggttcatgaaccaagttcaacggattaaatatcgaatcgaatgtcgaactataatcgagttggtt 37334404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 41449798 - 41449878
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggttgggataattgtc 251  Q
    |||||| |||||||  |||||||||||  |||||  | |||||| | |||||||||| ||||||||||| |||| ||||||    
T  41449798 atttggatcatgaaccaagttcaacgagataattgtcgaatcgagtttcgaactattgtcgagttggttcggatcattgtc 41449878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 233
Target Start/End: Original strand, 96248 - 96395
Alignment:
Q  86 tcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaat 185  Q
    ||||||||||||||| ||||| || || || || | ||||||||| |||||||| |||| ||||||||| ||||||||| |||| |||||||||| ||||    
T  96248 tcatgaaccaaacgagtcgaattacacataactcaagttcaactcatttatttaacgagcttaattttgaacttaagttggactcatttggttcacgaat 96347  T
Q  186 gaagttcaacgaattaattagcaaatcgaatctcgaactattttcgag 233  Q
     |||||||| |||||| ||| | || ||||||||||||||||||||||    
T  96348 taagttcaatgaattatttaacgaaccgaatctcgaactattttcgag 96395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 235
Target Start/End: Original strand, 7437260 - 7437421
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    |||||||||| |||||||||||||||| ||||||||||||||| | | ||||| ||| |||||||| |||| ||||||||  ||| ||||| |||| |||    
T  7437260 tatcgagttggttcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttatttaacgagcttaattttcaactaaagttcgactcatt 7437359  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagtt 235  Q
    |||||| ||||  ||||||||||||   |||| | |||||| | ||||||||||||||||||    
T  7437360 tggttcgtgaaccaagttcaacgaacccattatcgaatcgagtatcgaactattttcgagtt 7437421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 3081891 - 3081737
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| ||||||||||||||| | | ||||| ||| |||| ||| |||| ||||||||  ||| ||||| |||| ||||||||| ||||    
T  3081891 ttcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttaattaacgagcttaattttcaactcaagttcgactcatttggttcgtgaa 3081792  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
      ||||||||||||  ||||| | |||||| | |||||||||||||||| |||||    
T  3081791 ccaagttcaacgaaccaattatcgaatcgagtatcgaactattttcgagctggtt 3081737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 18095475 - 18095640
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    |||||| ||| ||||||||| ||| |||| ||||||| | ||||| | ||||| ||| |||||||| |||  ||||||||  ||| ||||| ||||||||    
T  18095475 tatcgaattggttcatgaacaaaatgaattgaactatgcatagctcaagttcatctcatttatttaacgaacttaatttttaactcaagttcgacttatt 18095574  T
Q  174 tggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||| ||||  |||||||||||||  |||| | |||||| |||| |||| |||| |||||||||    
T  18095575 tggttcgtgaaccaagttcaacgaatccattatcgaatcgagtctcaaactttttttgagttggtt 18095640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 17441172 - 17441279
Alignment:
Q  132 tttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcg 231  Q
    |||||||  |||| ||||||||  ||| |||||  ||| ||||||||||||||  ||||||||||||||||||| |||||||| | ||||||||||||||    
T  17441172 tttatttgacgagcttaattttcaactcaagttcaactcatttggttcatgaactaagttcaacgaattaattaccaaatcgagtttcgaactattttcg 17441271  T
Q  232 agttggtt 239  Q
     |||||||    
T  17441272 ggttggtt 17441279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 239
Target Start/End: Original strand, 13311980 - 13312145
Alignment:
Q  76 tcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttg 175  Q
    ||||| || |||||||||||||||| | |||| ||||| || | | ||||||||| |||||||| |||  ||||||||  ||| ||||| |||| |||||    
T  13311980 tcgagctggttcatgaaccaaacgagttgaaccatactaagttcaagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttg 13312079  T
Q  176 gttcatgaatgaagttcaacgaattaattagcaaatcga--atctcgaactattttcgagttggtt 239  Q
    |||||||||  |||| ||| |||  ||||| | ||||||  || ||||||||||||||||||||||    
T  13312080 gttcatgaaccaagtccaatgaaccaattatcgaatcgagtatatcgaactattttcgagttggtt 13312145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 18099783 - 18099937
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||||| ||||||| | ||||| | ||||| ||| |||||||| |||  |||||| |  ||| || || |||| ||||||||| ||||    
T  18099783 ttcatgaaccaaacgaattgaactatgcatagctcaagttcatctcatttatttaacgaacttaattgttaactcaaattcgactcatttggttcgtgaa 18099882  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
      |||||||||||||  |||| | |||||| |||| |||| ||||||||||||||    
T  18099883 ccaagttcaacgaatccattatcgaatcgagtctcaaacttttttcgagttggtt 18099937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 239
Target Start/End: Original strand, 1501816 - 1501969
Alignment:
Q  86 tcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaat 185  Q
    ||||||||||| ||| ||||||||||   |||||| |||   ||| |||||||| |||  ||||||||   || ||||| |  | ||||||||||||||     
T  1501816 tcatgaaccaaccgagtcgaactatatacagcttaagtttggctcatttatttaacgaacttaattttcagctcaagttcggttcatttggttcatgaac 1501915  T
Q  186 gaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||| ||||||  |||||||| | |||||| ||| |||||||||||    
T  1501916 gaagttcaacgagttaattgtcaaatcgagtttcgaacaattgtcgagttggtt 1501969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 239
Target Start/End: Complemental strand, 4441473 - 4441320
Alignment:
Q  86 tcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaat 185  Q
    ||||||||||| ||||||||||||||   || | | ||||| ||| |||||||| |||  ||||||||  ||| |||||   || |||| |||| ||||     
T  4441473 tcatgaaccaaccgaatcgaactatatacagttcaagttcagctcatttatttaacgaacttaattttcaactcaagttcagctcatttagttcgtgaac 4441374  T
Q  186 gaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
     |||||||||||  |||||  | |||||| | |||||||||| |||||||||||    
T  4441373 caagttcaacgagctaattgtcgaatcgagtttcgaactattgtcgagttggtt 4441320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 6999336 - 6999385
Alignment:
Q  187 aagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttg 236  Q
    ||||||||||||||||||| | |||||| |||| ||||||| ||||||||    
T  6999336 aagttcaacgaattaattatcgaatcgagtctcaaactattgtcgagttg 6999385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 8200688 - 8200752
Alignment:
Q  175 ggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||| |||||||||| ||||| || | | |||||| |||||||||  |||||||||||    
T  8200688 ggttcatgaatcaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggtt 8200752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 21079 - 21208
Alignment:
Q  109 atacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacgaattaattagca 208  Q
    |||||||||| | ||||||||| ||||||||  ||| ||||||||  ||| ||||| ||||  |||||||||||||  ||||||||||||| ||||| |     
T  21079 atacttagctcaagttcaactcatttatttaatgagcttaattttcaactcaagttcgactc-tttggttcatgaaccaagttcaacgaatcaattatcg 21177  T
Q  209 aatcgaatctcgaactattttcgagttggtt 239  Q
    |||||| ||||||||||||||||||||||||    
T  21178 aatcgagtctcgaactattttcgagttggtt 21208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 40458888 - 40459042
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    |||||||||||||||| ||||||||||||||| | | ||||| ||| |||||||| |||| ||||||||  ||| ||||| |||| ||||||||| ||||    
T  40458888 ttcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcgtgaa 40458987  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
      ||||||||| ||  |||||   |||||| | || |||||||||| ||||||||    
T  40458988 ccaagttcaacaaaccaattattgaatcgagtatcaaactattttcaagttggtt 40459042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 11007142 - 11006993
Alignment:
Q  88 atgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatga 187  Q
    ||||||||||||| ||||| ||||||||  | | ||||||||| |||||||| |||| ||||||||  ||| ||||| |||| ||||||||| ||||  |    
T  11007142 atgaaccaaacgagtcgaattatacttatttcaagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcgtgaacca 11007043  T
Q  188 agttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||||||||| ||||| |  |||||   || |||||||||||||||||||    
T  11007042 agttcaacgaatcaattatcggatcga--gtcaaactattttcgagttggtt 11006993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 251
Target Start/End: Complemental strand, 24844838 - 24844673
Alignment:
Q  86 tcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaat 185  Q
    |||||||||||  |||||||| ||||   | |||| ||||| ||| |||||||||||| |||||||||   || |||||   || ||||||||||||||     
T  24844838 tcatgaaccaattgaatcgaattatatacaccttaagttcagctcatttatttatcgaatttaattttcagctcaagttcagctcatttggttcatgaac 24844739  T
Q  186 gaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggttgggataattgtc 251  Q
     |||||||||||  |||||  | |||||| | |||||||||| ||||||||||| |||| ||||||    
T  24844738 caagttcaacgagataattgccgaatcgagtttcgaactattatcgagttggttcggatcattgtc 24844673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 10412397 - 10412561
Alignment:
Q  75 atcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttattt 174  Q
    |||||||||  |||||||||||| || ||| | ||||  ||||| | || |||||| |||||||| |||| ||||||||  ||| ||||| |||| || |    
T  10412397 atcgagttggctcatgaaccaaatgagtcggattatatatagctcaagtccaactcatttatttaacgagcttaatttttaactcaagttcgactcatct 10412496  T
Q  175 ggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
     ||| | |||   | || |||||| |||||| | |||||||||||||||||||||||||||||||    
T  10412497 agtttacgaaccgaatttaacgaactaattaccgaatcgaatctcgaactattttcgagttggtt 10412561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 235
Target Start/End: Complemental strand, 32713181 - 32713019
Alignment:
Q  73 ttatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttat 172  Q
    ||||||||||||  |||||| ||||||| |||||| ||||| || ||| |||||| |  |||||||| |||| ||||||||  || || ||| |||| ||    
T  32713181 ttatcgagttgaa-catgaatcaaacgagtcgaaccatactcagtttaagttcaaattatttatttaacgagcttaattttcaacatatgttcgactcat 32713083  T
Q  173 ttggttcatgaatgaag-ttcaacgaattaattagcaaatcgaatctcgaactattttcgagtt 235  Q
    ||||||||||||| ||| |||||||||| | ||| ||||| |||| | ||  ||||||||||||    
T  32713082 ttggttcatgaatcaagtttcaacgaatcatttatcaaattgaatattgagttattttcgagtt 32713019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 31000893 - 31000951
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactatttt 229  Q
    ||||||||||||||| ||||||| ||||||||||| | ||||||||||| |||||||||    
T  31000893 atttggttcatgaatcaagttcatcgaattaattaccgaatcgaatctcaaactatttt 31000951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 232
Target Start/End: Complemental strand, 12070684 - 12070540
Alignment:
Q  88 atgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatga 187  Q
    ||||| ||||||| ||||||||||| ||| ||| ||| ||||  ||| |||| ||| |||||||||  ||| ||||| || | |||| ||| | |||| |    
T  12070684 atgaagcaaacgagtcgaactatacatagtttaagtttaacttatttgtttaacgaatttaattttcaactcaagttcgattcatttagttgacgaatca 12070585  T
Q  188 agttcaacgaattaattagcaaatcgaatctcgaactattttcga 232  Q
    | |||||||||||||||| | ||| || |||| ||||||||||||    
T  12070584 aattcaacgaattaattaccgaattgagtctcaaactattttcga 12070540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 13829842 - 13829974
Alignment:
Q  82 tgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcat 181  Q
    |||| ||| |||||||||| |||||| ||||| |  | | ||||||||| |||| ||| |||||||||||||  ||| |||||  ||| |||||||| ||    
T  13829842 tgatccattaaccaaacgagtcgaaccatactcaattcaagttcaactcatttaattaacgagtttaatttttaactcaagttcaactcatttggtttat 13829941  T
Q  182 gaatgaagttcaacgaattaattagcaaatcga 214  Q
    |||  ||||||||||||| ||||| | ||||||    
T  13829942 gaaccaagttcaacgaatcaattatcgaatcga 13829974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 37314074 - 37314190
Alignment:
Q  78 gagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggt 177  Q
    |||||| |||||||| ||||| ||| ||||||||| ||||||| ||| |||   |||||||| | | |||||||||| ||| || ||||||||||||| |    
T  37314074 gagttggttcatgaatcaaacaaatggaactatacatagcttaagtttaacaaatttatttaacaaatttaattttgaactcaaatttgacttatttgat 37314173  T
Q  178 tcatgaatgaagttcaa 194  Q
    | |||||  ||||||||    
T  37314174 ttatgaacaaagttcaa 37314190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 27464670 - 27464591
Alignment:
Q  160 aagtttgacttatttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||| |||| ||||||||||||||  || |||||| ||| ||||| | |||| | ||||||||||||||||||||||||    
T  27464670 aagttcgactcatttggttcatgaaccaaattcaacaaatcaattatcgaatcaagtctcgaactattttcgagttggtt 27464591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 1094413 - 1094523
Alignment:
Q  74 tatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatt 173  Q
    ||||||| || ||||||| |||||||| |||||| ||||| | || | |||| |||| |||||| | |||| ||||||||  ||| ||||| |||| |||    
T  1094413 tatcgagctggttcatgatccaaacgagtcgaaccatactcaactcaagttcgactcatttattcaacgagcttaattttcaactcaagttcgactcatt 1094512  T
Q  174 tggttcatgaa 184  Q
    |||||||||||    
T  1094513 tggttcatgaa 1094523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 3409275 - 3409207
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||||||  ||||||||||| ||||||  | |||||| | |||||||||| |||||||||||    
T  3409275 atttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtttcgaactattgtcgagttggtt 3409207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 2328470 - 2328335
Alignment:
Q  79 agttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggtt 178  Q
    ||||| |||||||| || |||| ||||||||||  ||  | | ||||||||| |||||||   | ||||||||||  ||| |||||||||| ||||   |    
T  2328470 agttggttcatgaatcacacgagtcgaactatatataattcaagttcaactcatttatttgaagggtttaattttcaactcaagtttgactcatttaaat 2328371  T
Q  179 catgaatgaagttcaacgaattaattagcaaatcga 214  Q
    ||||||| ||||| ||||||||||||| | ||||||    
T  2328370 catgaataaagtttaacgaattaattaccgaatcga 2328335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 29806975 - 29807027
Alignment:
Q  187 aagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||||| ||||| | |||||| ||| ||||||||||||| ||||||    
T  29806975 aagttcaacgaatcaattatcgaatcgagtcttgaactattttcgaattggtt 29807027  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 239
Target Start/End: Complemental strand, 34116344 - 34116192
Alignment:
Q  87 catgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatg 186  Q
    |||||||||||||| |||||||| |  ||||| | ||||| |||  ||||||| |||  ||||||||   || ||||| | || ||||||||||||||      
T  34116344 catgaaccaaacgagtcgaactacatatagctcaagttcagctcaattatttagcgaacttaattttaagctcaagttcggctcatttggttcatgaact 34116245  T
Q  187 aagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||| || ||| |||||  |||||||||  |||||| |  |||||||||||    
T  34116244 aagttcgacaaatcaattattaaatcgaattacgaactctaatcgagttggtt 34116192  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 235
Target Start/End: Original strand, 1091707 - 1091844
Alignment:
Q  98 cgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacga 197  Q
    ||||||||||||||||| ||| | ||||||||| ||| |||  |||  ||||||||  ||| | ||| ||||  |||||||||||||| |||||||||||    
T  1091707 cgaatcgaactatacttggctcaagttcaactcatttgtttgacgaacttaattttaaactcaggttcgactcgtttggttcatgaatcaagttcaacga 1091806  T
Q  198 attaattagcaaatcgaatctcgaactattttcgagtt 235  Q
    |||||||| | |||||| |||| ||||||||| |||||    
T  1091807 attaattatcgaatcgagtctcaaactatttttgagtt 1091844  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 43384847 - 43384915
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||||||  || |||||||||||||||| | |||||||||||||||||||||||||||||||    
T  43384847 atttggttcatgaaccaacttcaacgaattaattatcgaatcgaatctcgaactattttcgagttggtt 43384915  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 22563961 - 22564125
Alignment:
Q  73 ttatcgagttgattcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttat 172  Q
    ||||||||||| |||||||||||||||| ||||| ||||  ||| | | ||||   || || ||||  |||| ||||||||  ||| ||||| || ||||    
T  22563961 ttatcgagttggttcatgaaccaaacgagtcgaattatatgtagttcaagttcggttcattcatttgacgagcttaattttcaactcaagttcgatttat 22564060  T
Q  173 ttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttgg 237  Q
    ||||||||||||  ||||||||||||  ||||| | |||| ||| || || ||||||||||||||    
T  22564061 ttggttcatgaaccaagttcaacgaaacaattaccgaatcaaatttcaaattattttcgagttgg 22564125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 12378405 - 12378469
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagtt 235  Q
    ||||||||| ||||  ||||||||||||| ||||| | || ||||||||| |||||||| |||||    
T  12378405 atttggttcgtgaaccaagttcaacgaatcaattatcgaaccgaatctcggactatttttgagtt 12378469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 39478103 - 39478171
Alignment:
Q  171 atttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    ||||||||||||||  |||| ||| |||  ||||| | |||||| | ||||||||||||||||||||||    
T  39478103 atttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcgaactattttcgagttggtt 39478171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 940 - 826
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    ||||||||||| |||| ||||| ||||||||||| | ||||||||| |||||||| |||| ||||||||  ||  || ||  ||| ||||||||||||||    
T  940 ttcatgaaccagacgagtcgaattatacttagctcaagttcaactcatttatttaacgagcttaattttcaacccaaattcaactcatttggttcatgaa 841  T
Q  185 tgaagttcaacgaat 199  Q
      |||||||||||||    
T  840 ccaagttcaacgaat 826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 51438 - 51327
Alignment:
Q  122 gttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaagttcaacgaattaattagcaaatcgaatctcga 221  Q
    ||||||||| |||||||| | || ||||||||  | | | ||| |||| |||||||||| |||  ||||||||||||||| ||| | || ||||||||||    
T  51438 gttcaactcatttatttaacaagcttaattttaaaatcacgttcgactcatttggttcacgaactaagttcaacgaattatttaccgaaccgaatctcga 51339  T
Q  222 actattttcgag 233  Q
    ||||||||||||    
T  51338 actattttcgag 51327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 239
Target Start/End: Original strand, 14397 - 14547
Alignment:
Q  89 tgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaatgaa 188  Q
    |||||||||||| ||||||||| | || || | ||||  ||| |||||||  |||| ||||||||  ||| |||||  | | ||||||||||||||  ||    
T  14397 tgaaccaaacgagtcgaactatccataactaaagttcggctcatttatttgacgagcttaattttcgactcaagttcaaatcatttggttcatgaaccaa 14496  T
Q  189 gttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
    |||||| |||| ||||| | |||||| | |||||||||||||| |||||||    
T  14497 gttcaatgaatcaattaccgaatcgagtttcgaactattttcgggttggtt 14547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 32956 - 32804
Alignment:
Q  85 ttcatgaaccaaacgaatcgaactatacttagcttatgttcaactcgtttatttatcgagtttaattttgcacttaagtttgacttatttggttcatgaa 184  Q
    ||||||||||| |||| |||||| ||||| || | | |||||| || |||||||| |||| |||||||   ||| ||||| |||| |||||||   ||||    
T  32956 ttcatgaaccagacgagtcgaaccatactaagttcaagttcaattcatttatttaacgagcttaatttacaactcaagttcgactcatttggtg--tgaa 32859  T
Q  185 tgaagttcaacgaattaattagcaaatcgaatctcgaactattttcgagttggtt 239  Q
      ||||||||||||  ||||  | |||||| | ||||||||||||||||||||||    
T  32858 ccaagttcaacgaaccaattgtcgaatcgagtatcgaactattttcgagttggtt 32804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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