View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_44 (Length: 247)
Name: NF20808_low_44
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 27764126 - 27764347
Alignment:
| Q |
16 |
caagactgacgaattcgcttgaaatagcatgacacatgaatttaacaataattgagtcaatgaaataaatttaaatttccaataccgannnnnnnaattc |
115 |
Q |
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| T |
27764126 |
caagactgatgaattcgcttgaaatagcatgactcatgaatttaacaaaaattgagtcaatgaaataaatttaaatttccaataccgatttttttaattc |
27764225 |
T |
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| Q |
116 |
aaattaagagaagaaaaataattattgataacagtggcactattgaccattttacaattatttcaaatggatgagaaacaaatattgatatgtgggaaaa |
215 |
Q |
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| T |
27764226 |
aaattaagagaagaaaaataattattgataacagtggcactattgaccattttacaattatttcaaatggatgagaaacaaatattgatatgtgggaaaa |
27764325 |
T |
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| Q |
216 |
atcataaaagtaccaacaatat |
237 |
Q |
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| T |
27764326 |
atcataaaagtaccaacaatat |
27764347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 237
Target Start/End: Complemental strand, 18116594 - 18116484
Alignment:
| Q |
127 |
agaaaaataattattgataacagtggcactattgaccattttacaattatttcaaatggatgagaaacaaatattgatatgtgggaaaaatcataaaagt |
226 |
Q |
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||||||| ||||||| ||||| ||||||||| |||||||||||||||||||| | |||||||| |||||| || ||| | | || ||||||||||||| |
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| T |
18116594 |
agaaaaaaaattattaataacggtggcactaatgaccattttacaattattttatatggatgacgaacaaagatcgatgagcgagagaaatcataaaagt |
18116495 |
T |
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| Q |
227 |
accaacaatat |
237 |
Q |
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| T |
18116494 |
accaacaatat |
18116484 |
T |
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