View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_53 (Length: 236)
Name: NF20808_low_53
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 107806 - 107586
Alignment:
| Q |
1 |
acagctgaaacagtcaataggaaatagaaagaattcaaagagcatgatagcataatttattacatgattaatcatggcattggcatggcacacactttgc |
100 |
Q |
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| T |
107806 |
acagctgaaacagtcaataggatatagaaagaattcaaagagcatgatagcataatttattacatgattaatcatggcattggcatggcacacactttgc |
107707 |
T |
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| Q |
101 |
cgacattggaacaaaaccattagaattttatggactagcgcattggctgaagaagatacatttaagattgaaacactaacttcaaaaacaatttagtcct |
200 |
Q |
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| T |
107706 |
cgacattggaacaaaaccattagaattttatggactagcgcattggctgaagaagatacatttaagattgaaacaccaacttcaaaaacaatttagtcct |
107607 |
T |
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| Q |
201 |
tgctaatgaagatgttatgga |
221 |
Q |
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||||||||||||||||||||| |
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| T |
107606 |
tgctaatgaagatgttatgga |
107586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 88311 - 88236
Alignment:
| Q |
1 |
acagctgaaacagtcaataggaaatagaaagaattcaaagagcatgatagcataatttattacatgattaatcatg |
76 |
Q |
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|||||||||||| | |||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
88311 |
acagctgaaacaatgaataggaaataggaagaagtcaaagaacatgatagcataattcattacatgattaatcatg |
88236 |
T |
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