View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20808_low_54 (Length: 232)

Name: NF20808_low_54
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20808_low_54
NF20808_low_54
[»] chr5 (1 HSPs)
chr5 (5-100)||(10530063-10530158)
[»] chr1 (1 HSPs)
chr1 (22-79)||(51492302-51492359)
[»] chr7 (1 HSPs)
chr7 (22-56)||(48882284-48882318)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 10530063 - 10530158
Alignment:
Q  5 cagcaagggtgtcagatgactcccaaagctttgtgttacgactcttccaaaggcaccaaagtaacattacgacaattttttggtggtgagtggata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||| ||||||||    
T  10530063 cagcaagggtgtcagatgactcccaaagctttgtgttacgactcttccaaaggcaccaaactaacattacgacaatttgatggtggttagtggata 10530158  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 51492302 - 51492359
Alignment:
Q  22 gactcccaaagctttgtgttacgactcttccaaaggcaccaaagtaacattacgacaa 79  Q
    |||||||||||||||| ||| |||||||||||||| | ||| |||| |||||||||||    
T  51492302 gactcccaaagctttgcgtttcgactcttccaaagactccagagtagcattacgacaa 51492359  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 48882318 - 48882284
Alignment:
Q  22 gactcccaaagctttgtgttacgactcttccaaag 56  Q
    ||||| |||||||||||||||||||||||||||||    
T  48882318 gactctcaaagctttgtgttacgactcttccaaag 48882284  T

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