View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_55 (Length: 232)
Name: NF20808_low_55
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_55 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 108054 - 108284
Alignment:
| Q |
1 |
atgacatcgatttttccccaacatccattgttgcttattgaattgtattctgttgctatttcaatgaatattagcagtttctatgtgcttcaaatatgtt |
100 |
Q |
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| T |
108054 |
atgacatcgatttttccccaacatccattgttgattattgaattgtattctgttgctatttcaatgaatattagcagtttctatgtgcttcaaatatgtt |
108153 |
T |
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| Q |
101 |
tgtgttcaagaggacaaaattttgtccttctgctgtgcagataatagctctctcacttccttg----atacaggtacacaaacatttccaaattctactt |
196 |
Q |
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| T |
108154 |
tgtgttcaagaggacaagattttgtccttc-----tgcagataatagctctctcacttccttgatacatacaggtacacaaacatttccaaattctactt |
108248 |
T |
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| Q |
197 |
tgggatgggtgtatgtgaaagatgttgcaaatgccc |
232 |
Q |
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| T |
108249 |
tgggatgggtgtatgtgaaagatgttgcaaatgccc |
108284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 88978 - 89178
Alignment:
| Q |
30 |
gttgcttattgaattgtattctgttgctatttcaatgaatattagcagtttctatgtgcttcaaatatgtttgtgttcaagaggacaaaattttgtcctt |
129 |
Q |
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| T |
88978 |
gttgcttattgtgttctcttttgttgttattttaatgaatattagcagtttttatgtacttcaaatatgtttgtgttcaagaggacaagattttgtcctt |
89077 |
T |
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| Q |
130 |
ctgctgtgcagataat---agctctctcacttccttgatacaggtacacaaacatttccaaattctactttgggatgggtgtatgtgaaagatgttgcaa |
226 |
Q |
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| T |
89078 |
c-----tgtagataatagaagctctttcacttccttgatacaggtgcacagacatttccaaatgctagttttggatgggtcaatgtgaaagatgttgcaa |
89172 |
T |
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| Q |
227 |
atgccc |
232 |
Q |
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| T |
89173 |
atgccc |
89178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 2708065 - 2708137
Alignment:
| Q |
160 |
cttgatacaggtacacaaacatttccaaattctactttgggatgggtgtatgtgaaagatgttgcaaatgccc |
232 |
Q |
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| T |
2708065 |
cttgatacaggtgcacaaacatttcgaaatgctagtttttgatgggtcaatgtgaaagatgttgcaaatgccc |
2708137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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