View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_56 (Length: 231)
Name: NF20808_low_56
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_56 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 24168455 - 24168685
Alignment:
| Q |
1 |
aatatgtcactctcaaactcaacaaacaaacccaaacctcttctttcttggaagcctcgcgctaccatttcacttctttcatttttaaccgacgcttgtt |
100 |
Q |
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| T |
24168455 |
aatatgtcacactcaaactcaacaaacaaacccaaacctcttctttcttggaagcctcgcgctaccatttcacttctttcatttttaaccgacgcttgtt |
24168554 |
T |
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| Q |
101 |
gtcgctctaacggcacattcaaccgccgtctctttaacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggcgtttccaccacagacat |
200 |
Q |
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| T |
24168555 |
gtcgctctaacggcacattcaaccgccgtctctttaacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggtgtttccatcaaagacat |
24168654 |
T |
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| Q |
201 |
tatcgttcactccgaaaataatgtttggttc |
231 |
Q |
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| T |
24168655 |
taccgttaactccgaaaataacgtttggttc |
24168685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 230
Target Start/End: Original strand, 24151651 - 24151845
Alignment:
| Q |
36 |
acctcttctttcttggaagcctcgcgctaccatttcacttctttcatttttaaccgacgcttgttgtcgctctaacggcacattcaaccgccgtctcttt |
135 |
Q |
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| T |
24151651 |
acctcttcttccttggaaagctagagctaccatttcacttctttcacttttattcgacgcttcttctcgctctaacggcaccgtcaaccgccgtctcttt |
24151750 |
T |
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| Q |
136 |
aacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggcgtttccaccacagacattatcgttcactccgaaaataatgtttggtt |
230 |
Q |
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| T |
24151751 |
aacttcttcagtctcaatgcctcacctaactccactcccgttaacggcgtttccaccaaagacattaccgttaacaccgaaaataacgtttggtt |
24151845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 230
Target Start/End: Original strand, 24178914 - 24179120
Alignment:
| Q |
24 |
aaacaaacccaaacctcttctttcttggaagcctcgcgctaccatttcacttctttcatttttaaccgacgcttgttgtcgctctaacggcacattcaac |
123 |
Q |
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|||| ||||||||||||||||| |||||||| |||||||| |||||||||||| || ||||||| ||||||| ||||| ||||||| || ||||| |
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| T |
24178914 |
aaaccaacccaaacctcttcttccttggaaggtccgcgctacaatttcacttcttacagttttaacggacgcttcatgtcgagctaacggtaccgtcaac |
24179013 |
T |
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| Q |
124 |
cgccgtctctttaacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggcgtttccaccacagacattatcgttcactccgaaaataatg |
223 |
Q |
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| T |
24179014 |
cgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactcctgttaacggcgtttccaccaaagacgttaccgttaacgccgaaaataacg |
24179113 |
T |
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| Q |
224 |
tttggtt |
230 |
Q |
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||||||| |
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| T |
24179114 |
tttggtt |
24179120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 231
Target Start/End: Original strand, 24188718 - 24188927
Alignment:
| Q |
22 |
acaaacaaacccaaacctcttctttcttggaagcctcgcgctaccatttcacttctttcatttttaaccgacgcttgttgtcgctctaacggcacattca |
121 |
Q |
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||||| |||||||||||| ||||| |||||||| |||||||| |||||||||||| || ||||||| ||| ||| |||||| | |||||||| ||| |
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| T |
24188718 |
acaaataaacccaaacctgttcttccttggaaggtccgcgctacaatttcacttcttacagttttaacggactcttcatgtcgcgcaaacggcaccgtca |
24188817 |
T |
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| Q |
122 |
accgccgtctctttaacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggcgtttccaccacagacattatcgttcactccgaaaataa |
221 |
Q |
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| T |
24188818 |
atcgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtttccactaaagacgtcaccgttaactccgaaaacaa |
24188917 |
T |
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| Q |
222 |
tgtttggttc |
231 |
Q |
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| T |
24188918 |
cctttggttc |
24188927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 24112437 - 24112567
Alignment:
| Q |
101 |
gtcgctctaacggcacattcaaccgccgtctctttaacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggcgtttccaccacagacat |
200 |
Q |
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| T |
24112437 |
gtcgctctaacggcaccgttaaccgccgttttcttaatttcttagatcgcaaatcttcccctaacgccatccctgttaacggcgtttccaccaaagacgt |
24112536 |
T |
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| Q |
201 |
tatcgttcactccgaaaataatgtttggttc |
231 |
Q |
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| T |
24112537 |
tatcgttaacgcagaagataacgtttggttc |
24112567 |
T |
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