View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_58 (Length: 221)
Name: NF20808_low_58
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 29709551 - 29709368
Alignment:
| Q |
20 |
tcatggataaccgtaatatgagaatgaataaaggagaaaattataccttattcgcggcagcactgcaataaaatactagcttttcatacatagaggaagc |
119 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29709551 |
tcatggataaccgtaatatgagaatgaataaaggacaaaattatatcttattcgcggtggcactgcaatacaatactagcttttcatacatagaggaagc |
29709452 |
T |
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| Q |
120 |
aggcaaaatatcaccatgcaaattctccatctttgttatgatatgatcaaccttggaattagcaacataccatctaatgtctat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29709451 |
aggcaaaatatcaccatgcaaattctccatctttgttatgatatgatcaaccttggaattagcaacataccatctaatgtctat |
29709368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 55809418 - 55809601
Alignment:
| Q |
20 |
tcatggataaccgtaatatgagaatgaataaaggagaaaattataccttattcgcggcagcactgcaataaaatactagcttttcatacatagaggaagc |
119 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
55809418 |
tcatggataaccgtaatatgagaatgaataaaggacaaaattatatcttattcgcggtggcactgcaatacaatactagcttttcatacatagaggaagc |
55809517 |
T |
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| Q |
120 |
aggcaaaatatcaccatgcaaattctccatctttgttatgatatgatcaaccttggaattagcaacataccatctaatgtctat |
203 |
Q |
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| T |
55809518 |
atgcaaaatttcaccatgcaaattctccatctttcttatgatatgatcaaccttgaaattagcaacataccatctaatgtctat |
55809601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 55806094 - 55806277
Alignment:
| Q |
20 |
tcatggataaccgtaatatgagaatgaataaaggagaaaattataccttattcgcggcagcactgcaataaaatactagcttttcatacatagaggaagc |
119 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| | | | ||| || |||| ||||||||||||||||||||||||||||| |
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| T |
55806094 |
tcatggataaccgtaatatgagaatgaataaaggacaaaattataccttatccacagtggcaatgtaatacaatactagcttttcatacatagaggaagc |
55806193 |
T |
|
| Q |
120 |
aggcaaaatatcaccatgcaaattctccatctttgttatgatatgatcaaccttggaattagcaacataccatctaatgtctat |
203 |
Q |
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||||||||| |||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
55806194 |
aggcaaaatttcaccagtcaaattctccatctttcttatgatatgatcaaccttaaaattagcaacataccatctaatgtctat |
55806277 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 192
Target Start/End: Complemental strand, 15173162 - 15172992
Alignment:
| Q |
25 |
gataaccgtaatatgagaatgaataaaggagaaaattataccttattcgcggcagcactgcaataaaatactagcttttcatacatagaggaagcaggca |
124 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| | | | ||| |||||| || | ||||||||||||||||||||| ||||||| |
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| T |
15173162 |
gataaccgtattatgagaatgaataaaggagaaaattataccttgtccttg---ccacagcaatacaaaattagcttttcatacatagaggacgcaggca |
15173066 |
T |
|
| Q |
125 |
aaatat------caccatgcaaattctccatctttgttatgatatgatcaaccttggaattagcaacataccat |
192 |
Q |
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|||| | |||||||||||||||| |||||| |||||||||| ||||||||| ||||| ||||| ||||| |
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| T |
15173065 |
aaatttccaacacaccatgcaaattctcaatcttttttatgatatgctcaaccttgaaattaccaacaaaccat |
15172992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 203
Target Start/End: Complemental strand, 15168356 - 15168252
Alignment:
| Q |
96 |
tagcttttcatacatagaggaagcaggcaaaatatcaccatgcaaattctccatctttgttatgatatgatcaaccttggaattagcaacataccatcta |
195 |
Q |
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||||||||||||||||||||| |||||||| | |||||||||||||||| |||||| ||||||||| ||||||||| ||||| ||||| ||||| || |
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| T |
15168356 |
tagcttttcatacatagaggacgcaggcaaca---caccatgcaaattctcgatcttttctatgatatgctcaaccttgaaattatcaacaaaccatata |
15168260 |
T |
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| Q |
196 |
atgtctat |
203 |
Q |
| |
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|||||||| |
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| T |
15168259 |
atgtctat |
15168252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 1523403 - 1523360
Alignment:
| Q |
25 |
gataaccgtaatatgagaatgaataaaggagaaaattatacctt |
68 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1523403 |
gataaccataatatgagaatgaataaaggagaaaattatacctt |
1523360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 8492930 - 8492973
Alignment:
| Q |
25 |
gataaccgtaatatgagaatgaataaaggagaaaattatacctt |
68 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8492930 |
gataaccataatatgagaatgaataaaggagaaaattatacctt |
8492973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 8519503 - 8519546
Alignment:
| Q |
25 |
gataaccgtaatatgagaatgaataaaggagaaaattatacctt |
68 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8519503 |
gataaccataatatgagaatgaataaaggagaaaattatacctt |
8519546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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