View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_60 (Length: 217)
Name: NF20808_low_60
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 54180206 - 54180403
Alignment:
| Q |
1 |
ttgtgaaatcgtatatcagatatcagaactgcattgttattatcaatatatataatgatacttatgaatcgttgttacaccaaaactcattattgaccat |
100 |
Q |
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| T |
54180206 |
ttgtgaaatcgtatatcagatatcagaactgcattgttattatcaatatatataatgatacttatgaatcgttgttacaccaaaactcattattgaccat |
54180305 |
T |
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| Q |
101 |
agacaaatttaacttggtatcaaatccctcagacatcacaaaacacattgtatgtctgaacattttgttcttttttctcatatgaatgatatcatacgt |
199 |
Q |
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| T |
54180306 |
agacaaatttaacttggtatc-aatccctcagacatcacaaaacacattgtatgtctgaacattttgttcttttttctcatatgaatgatatcatacgt |
54180403 |
T |
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