View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20808_low_8 (Length: 503)
Name: NF20808_low_8
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_8 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 36 - 323
Target Start/End: Original strand, 21626491 - 21626780
Alignment:
| Q |
36 |
gttgtttttctcctttgagcccacttctgaagcactcatcattactatttttgcatccatgcattgttgcacgaatcactcacaaaaaggtgtaataatt |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21626491 |
gttgtttttctcctttgagcccacttctgaagcactcatcattactatttttgcatccatgcattgttgcacgaatcactcacaaaaaggagtaataatt |
21626590 |
T |
|
| Q |
136 |
tggattgttcttttgggtgtgagtgggtttgtgcagatcactggagagacagtgggagaagtgaaggcagtagcaggcatgcatcaaagaaaagctgaga |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21626591 |
tggattgttcttttgggtgtgagtgggtttgtgcagatcactggagagacagtgggagaagtgaaggcagtagcaggcatgcatcaaagaaaagctgaga |
21626690 |
T |
|
| Q |
236 |
tggctaagcattctgatgcttttattgccttaccaggttggttcccattccaccaatattcttcttttaactata--tatagtacatgca |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21626691 |
tggctaagcattctgatgcttttattgccttaccaggttggttcccattccaccaatattcttcttttaactatatatatagtacatgca |
21626780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 355 - 480
Target Start/End: Original strand, 21626812 - 21626938
Alignment:
| Q |
355 |
agttattggcaacactaaatcaaggatcacttaatt-aatttaaagttgtacactcgttgttgttatgtttttactgtaaagttctggtacaattcagat |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
21626812 |
agttattggcaacactaaatcaaggatcacttaatttaatttaaagttgtacactcgttgttgttatgtttttactgtgaaattctggtacaattcagat |
21626911 |
T |
|
| Q |
454 |
tagctcagttaacagggacaatacata |
480 |
Q |
| |
|
|| ||||||||| |||||||||||||| |
|
|
| T |
21626912 |
taactcagttaatagggacaatacata |
21626938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 187 - 274
Target Start/End: Complemental strand, 28270807 - 28270720
Alignment:
| Q |
187 |
gtgggagaagtgaaggcagtagcaggcatgcatcaaagaaaagctgagatggctaagcattctgatgcttttattgccttaccaggtt |
274 |
Q |
| |
|
||||||||||| || || ||||||| ||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28270807 |
gtgggagaagtaaaagctgtagcagatatgcatcaaaggaaggcagagatggctaagcattcagatgcttttattgccttaccaggtt |
28270720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 77702 - 77801
Alignment:
| Q |
175 |
actggagagacagtgggagaagtgaaggcagtagcaggcatgcatcaaagaaaagctgagatggctaagcattctgatgcttttattgccttaccaggtt |
274 |
Q |
| |
|
||||| || ||||| |||||||| ||||| || || | ||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||| |
|
|
| T |
77702 |
actggtgaaacagtaggagaagttaaggctgttgctgatatgcatcaaaggaaagctgagatggccaaacattcagatgcttttattgccttaccaggtt |
77801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 40888582 - 40888483
Alignment:
| Q |
175 |
actggagagacagtgggagaagtgaaggcagtagcaggcatgcatcaaagaaaagctgagatggctaagcattctgatgcttttattgccttaccaggtt |
274 |
Q |
| |
|
||||| || ||||| |||||||| ||||| || || | ||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||| |
|
|
| T |
40888582 |
actggtgaaacagtaggagaagttaaggctgttgctgatatgcatcaaaggaaagctgagatggccaaacattcagatgcttttattgccttaccaggtt |
40888483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 277
Target Start/End: Complemental strand, 40464674 - 40464572
Alignment:
| Q |
175 |
actggagagacagtgggagaagtgaaggcagtagcaggcatgcatcaaagaaaagctgagatggctaagcattctgatgcttttattgccttaccaggtt |
274 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||||| | |||||||||||| |||||||| ||| ||| |||||||||| ||||| || |||||||||| |
|
|
| T |
40464674 |
actggtgaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcattaccaggtt |
40464575 |
T |
|
| Q |
275 |
ggt |
277 |
Q |
| |
|
||| |
|
|
| T |
40464574 |
ggt |
40464572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 14904728 - 14904788
Alignment:
| Q |
214 |
atgcatcaaagaaaagctgagatggctaagcattctgatgcttttattgccttaccaggtt |
274 |
Q |
| |
|
|||||| |||| || ||||||| ||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
14904728 |
atgcataaaaggaatgctgagacggctaggcattccgatgcttttattgccttaccaggtt |
14904788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University