View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20808_low_9 (Length: 494)
Name: NF20808_low_9
Description: NF20808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20808_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 3 - 479
Target Start/End: Original strand, 43580327 - 43580801
Alignment:
| Q |
3 |
aagaaaatctcaatatagcatacaatgatttttctaatcaaattaactctcaagcatcacaattacaatcattatataagagttttcaaagatttgagtg |
102 |
Q |
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| T |
43580327 |
aagaaaatctcaatatagcatacaatgatttttctaatcaaattaactctcaagcatcacaattacaatcattatataggagttttcaaatatttgagtg |
43580426 |
T |
|
| Q |
103 |
cttgagaaaagaaaaatgagaaaattccgtgttaagaaaaattgttagtacgtaatgaactatatagcttttgagaatagaaggaataaactcattagaa |
202 |
Q |
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| T |
43580427 |
cttgagaaaagaaaaatgagaaaattccgtgttaagaaaaattgttagta----atgaactatatagcttttgagaatagaaggaataaactcattagaa |
43580522 |
T |
|
| Q |
203 |
agtgtgaatctattcacatattcacacataaatattttacggatcaattcgatgtttaaaacaatatttattgataaacaaagagtcgattcactcattc |
302 |
Q |
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| T |
43580523 |
agtgtgaatcgattcacatattcacacataaatattttacggatcaattcgatgtttaaaacaatatttattgataaacaaagagtcgattcactcattc |
43580622 |
T |
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| Q |
303 |
ataaatcttgagatgtgaatgaattcacatcaataaaaatataataagtcaattttcatacagtgaatcaattcatatgtataaaagtgaaatgattcat |
402 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43580623 |
ataaatcttgagctgtgaatgaattcacatcaataaaaatataataagtcaattttcatacagtgaatcaattcatatgtataaaagtgaaatgattcat |
43580722 |
T |
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| Q |
403 |
gttaacatagctttcaaaaacatgcatataagatttc--taggagagcagggatgtgattcttaatgggcagttattta |
479 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||| |
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| T |
43580723 |
gttaacatagctttcaaaaacatgcatataagatttctataggagagtagtgatgtgattcttaatggacagttattta |
43580801 |
T |
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