View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20809_high_18 (Length: 363)
Name: NF20809_high_18
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 4712747 - 4713079
Alignment:
| Q |
18 |
atggactcatacctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatggaatcgagttgctctctcagcttcgtca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4712747 |
atggactcatacctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagttgctctctcagcttcgtca |
4712846 |
T |
|
| Q |
118 |
tattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712847 |
tattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctat |
4712946 |
T |
|
| Q |
218 |
ggttcggataacgaacctcttaggtggaatcaaagacttaatattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712947 |
ggttcggataacgaacctcttaggtggaatcaaagacttaatattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataata |
4713046 |
T |
|
| Q |
318 |
tcatacaccgtgacgttaagagtacaaatatat |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4713047 |
tcatacaccgtgacgttaagagtacaaatatat |
4713079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 4846702 - 4847034
Alignment:
| Q |
18 |
atggactcatacctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatggaatcgagttgctctctcagcttcgtca |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
4846702 |
atggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgataaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtca |
4846801 |
T |
|
| Q |
118 |
tattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctat |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| ||| ||| |||||| |||||||||||||| |
|
|
| T |
4846802 |
tattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgtggtactctcagtgaacatctctat |
4846901 |
T |
|
| Q |
218 |
ggttcggataacgaacctcttaggtggaatcaaagacttaatattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataata |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
4846902 |
ggttcggataatgaacctcttaggtggaatcaaagactcgagattctattaggtgcagcaagggggttgaattatcttcatgaaggtgcgaagcacaata |
4847001 |
T |
|
| Q |
318 |
tcatacaccgtgacgttaagagtacaaatatat |
350 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| |
|
|
| T |
4847002 |
tcatacatcgtgacgttaagagtacaaacatat |
4847034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 25 - 342
Target Start/End: Complemental strand, 4863317 - 4863000
Alignment:
| Q |
25 |
catacctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatggaatcgagttgctctctcagcttcgtcatattcac |
124 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| ||||||| ||||||| |||||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
4863317 |
catacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatgagatcgaattactctctcagcttcgtcatattcac |
4863218 |
T |
|
| Q |
125 |
ttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttcgg |
224 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||| || ||||||||||| ||||||||||| ||| ||| |||||||||||||||| |||| |||||||||| |
|
|
| T |
4863217 |
ttggtttctctcattggatattgcaacgaaggtgaggagatgattctcgtttatgacttcatgcaacgtggcactctccgtgaatatctttatggttcgg |
4863118 |
T |
|
| Q |
225 |
ataacgaacctcttaggtggaatcaaagacttaatattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataatatcataca |
324 |
Q |
| |
|
|||| |||||||||| ||||| | |||||| | ||||| || | ||||||||||| || ||||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
4863117 |
ataatgaacctcttacttggaagaagagacttgagattctgttgggggcagcaagggggttacattatcttcatgctggtgtaaagcacaatatcataca |
4863018 |
T |
|
| Q |
325 |
ccgtgacgttaagagtac |
342 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
4863017 |
ccgtgacgtgaagagtac |
4863000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 55 - 342
Target Start/End: Original strand, 4697908 - 4698195
Alignment:
| Q |
55 |
gggttctcgacaaggtctaaatgaattcatgaatggaatcgagttgctctctcagcttcgtcatattcacttagtttccctcattggatattgcaatgaa |
154 |
Q |
| |
|
|||||||| ||||||| |||| || |||||||||| |||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| ||| |
|
|
| T |
4697908 |
gggttctcaacaaggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaa |
4698007 |
T |
|
| Q |
155 |
gatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttcggataacgaacctcttaggtggaatcaaagac |
254 |
Q |
| |
|
| ||||||||||||||| ||||| ||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||||| | |||| |
|
|
| T |
4698008 |
ggtgcagagatgattctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataacgaacctcttacttggaagaagagac |
4698107 |
T |
|
| Q |
255 |
ttaatattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataatatcatacaccgtgacgttaagagtac |
342 |
Q |
| |
|
| | |||||||| | |||||||| || | ||||||||||||| |||||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
4698108 |
tcgagattctattgggggcagcaagaggcctacattatcttcatgcaggtgcgaagcacaatatcatacaccgtgatgtgaagagtac |
4698195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 32 - 350
Target Start/End: Original strand, 4784530 - 4784848
Alignment:
| Q |
32 |
gttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatggaatcgagttgctctctcagcttcgtcatattcacttagttt |
131 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||||| | || || ||| |||||| || |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4784530 |
gttgcgataaaacgtcttaaaccaggttctcaacaaggtgtgaacgagttcttgaatgagattgagttgctctctcagcttcgtcatattcacttggttt |
4784629 |
T |
|
| Q |
132 |
ccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttcggataacga |
231 |
Q |
| |
|
| || ||||||||||||||||||| || |||||||||||| ||||||||||| ||| ||| ||||| ||| ||||| |||| ||||| || |||||| | |
|
|
| T |
4784630 |
cacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaa |
4784729 |
T |
|
| Q |
232 |
acctcttaggtggaatcaaagacttaatattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataatatcatacaccgtgac |
331 |
Q |
| |
|
|||||||| ||||| || || ||| | ||||||||| |||| || |||| ||||||||||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
4784730 |
acctcttacctggaagcagaggcttgagattctattaggtgccgcgcgggggttgcattatctgcatgcaggtgcgaagcacaatatcatacaccgtgac |
4784829 |
T |
|
| Q |
332 |
gttaagagtacaaatatat |
350 |
Q |
| |
|
|| ||||||||||| |||| |
|
|
| T |
4784830 |
gtgaagagtacaaacatat |
4784848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 32 - 350
Target Start/End: Original strand, 4816959 - 4817277
Alignment:
| Q |
32 |
gttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatggaatcgagttgctctctcagcttcgtcatattcacttagttt |
131 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||||| | || || ||| |||||| || |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4816959 |
gttgcgataaaacgtcttaaacctggttctcaacaaggtgttaacgagttcttgaatgagattgagttgctctctcagcttcgtcatattcacttggttt |
4817058 |
T |
|
| Q |
132 |
ccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttcggataacga |
231 |
Q |
| |
|
| || ||||||||||||||||||| || |||||||||||| ||||||||||| ||| ||| ||||| ||| ||||| |||| ||||| || |||||| | |
|
|
| T |
4817059 |
cacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaa |
4817158 |
T |
|
| Q |
232 |
acctcttaggtggaatcaaagacttaatattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagcataatatcatacaccgtgac |
331 |
Q |
| |
|
|||||||| ||||| || || ||| | ||||||||| |||| || |||| ||||||||| | |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
4817159 |
acctcttacctggaagcagaggcttgagattctattaggtgccgcgcgggggttgcattatttgcatgcaggtgcgaagcacaatatcatacaccgtgat |
4817258 |
T |
|
| Q |
332 |
gttaagagtacaaatatat |
350 |
Q |
| |
|
|| ||||||||||| |||| |
|
|
| T |
4817259 |
gtgaagagtacaaacatat |
4817277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 180
Target Start/End: Complemental strand, 4630334 - 4630182
Alignment:
| Q |
28 |
acctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatggaatcgagttgctctctcagcttcgtcatattcactta |
127 |
Q |
| |
|
|||||||||||||||||| | |||| || |||| ||||||| || || |||||||| | ||||||||||||||| |||||||| || |||||||| |
|
|
| T |
4630334 |
acctgttgcgataaaacgcctcaaatcaggctctcaacaaggtgccaacgagttcatgaacgaaatcgagttgctctcccagcttcgccacattcacttg |
4630235 |
T |
|
| Q |
128 |
gtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatga |
180 |
Q |
| |
|
|| ||||| | |||||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
4630234 |
gtgtcccttgtaggatattgcaatgacaacacagagatgattctggtttatga |
4630182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 4643077 - 4642977
Alignment:
| Q |
80 |
ttcatgaatggaatcgagttgctctctcagcttcgtcatattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatg |
179 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| || |||||||| || |||||| | ||||||||||| || || ||||||||||| | ||||||| |
|
|
| T |
4643077 |
ttcatgaatgaaatcgagttgctctcccagcttcgccacattcacttggtgtccctcgtgggatattgcaacgatgacacagagatgattttggtttatg |
4642978 |
T |
|
| Q |
180 |
a |
180 |
Q |
| |
|
| |
|
|
| T |
4642977 |
a |
4642977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 4666308 - 4666208
Alignment:
| Q |
80 |
ttcatgaatggaatcgagttgctctctcagcttcgtcatattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatg |
179 |
Q |
| |
|
|||||||| | |||||| ||||||||||||||||| || |||||||| || ||||| | |||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
4666308 |
ttcatgaacgaaatcgaattgctctctcagcttcgccacattcacttggtatcccttgtgggatattgcaatgacgacacagagatgattctggtttatg |
4666209 |
T |
|
| Q |
180 |
a |
180 |
Q |
| |
|
| |
|
|
| T |
4666208 |
a |
4666208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 4652944 - 4652751
Alignment:
| Q |
29 |
cctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatggaatcgagttgctctctcagcttcgtcatattcacttag |
128 |
Q |
| |
|
||||||||||||||||| | |||| || |||| ||||||| || || |||||||||| |||||||| ||||| |||||||| || |||||||| | |
|
|
| T |
4652944 |
cctgttgcgataaaacgcctcaaatctggctctcaacaaggtgccaacgagttcatgaatgagatcgagttactctcccagcttcgccacattcacttgg |
4652845 |
T |
|
| Q |
129 |
tttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttc |
222 |
Q |
| |
|
| |||||| | |||||||||||||| || |||| |||||| | |||||||| || ||| |||| || ||||| |||| |||| |||||||| |
|
|
| T |
4652844 |
tatccctcgtgggatattgcaatgatgacacagaaatgattttggtttatgagttcatgcaacacggtactctgtgtgagtatctttatggttc |
4652751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 180
Target Start/End: Complemental strand, 4661226 - 4661077
Alignment:
| Q |
31 |
tgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatggaatcgagttgctctctcagcttcgtcatattcacttagtt |
130 |
Q |
| |
|
||||||||| ||||| | |||| ||| |||| ||||||| | || || |||||||| | ||||||||||||||| |||||||| || ||||| || || |
|
|
| T |
4661226 |
tgttgcgattaaacgcctcaaatcgggctctcaacaaggtgtcaacgagttcatgaacgaaatcgagttgctctcccagcttcgccacattcatttggtg |
4661127 |
T |
|
| Q |
131 |
tccctcattggatattgcaatgaagatgcagagatgattcttgtttatga |
180 |
Q |
| |
|
|||||||| |||||||| ||||| | || |||||||||| |||||||| |
|
|
| T |
4661126 |
tccctcatgggatattgtaatgacaacacatagatgattctggtttatga |
4661077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 4636251 - 4636130
Alignment:
| Q |
59 |
tctcgacaaggtctaaatgaattcatgaatggaatcgagttgctctctcagcttcgtcatattcacttagtttccctcattggatattgcaatgaagatg |
158 |
Q |
| |
|
|||| ||||||| |||||| |||||||| | |||||||||||||| |||||||| || |||||||| || ||||| | ||||||||||| || | |
|
|
| T |
4636251 |
tctcaacaaggtgcaaatgagttcatgaacgagatcgagttgctctcccagcttcgccacattcacttggtatcccttgtgggatattgcaacgacaaga |
4636152 |
T |
|
| Q |
159 |
cagagatgattcttgtttatga |
180 |
Q |
| |
|
||||||||||||| || ||||| |
|
|
| T |
4636151 |
cagagatgattctggtctatga |
4636130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 4672013 - 4671945
Alignment:
| Q |
80 |
ttcatgaatggaatcgagttgctctctcagcttcgtcatattcacttagtttccctcattggatattgc |
148 |
Q |
| |
|
|||||||| | ||||||||| |||||||| ||||| || |||||||| || |||||| ||||||||||| |
|
|
| T |
4672013 |
ttcatgaacgaaatcgagttactctctcaacttcgccacattcacttggtatccctcgttggatattgc |
4671945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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