View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_high_19 (Length: 338)
Name: NF20809_high_19
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_high_19 |
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| [»] scaffold0113 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 30685315 - 30685016
Alignment:
| Q |
13 |
aatatgtttattttaacatttctctaactcaatgatttgactgcttttttaaatatcaattgaaaattttataacatggcaaatagcaatggatgataaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |
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| T |
30685315 |
aatatgtttattttaacatttctctaactcaatgatttgactgcttttttaaatatcaattgaaaaaaatttaacattgcaaatagcaatggatgataaa |
30685216 |
T |
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| Q |
113 |
gtaattttctacaacggaatatatttgggtatgggttcgggggcgaatatttatatccccgttacccgactgacattcacttgtgaagaaaaatttattc |
212 |
Q |
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| T |
30685215 |
gtaattttctacaataaaacatgtttgggtatggattcggggtcgaatatttatatccccgttacccgacagacattcacttgggaagaaaaattta--- |
30685119 |
T |
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| Q |
213 |
actttgtgacccatatttctctaattgagtcatcaccacttttggaaactctataaatagagttgcacgtcaccattttcttgtatcacatcatattatc |
312 |
Q |
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| T |
30685118 |
---ttgtgacccatatttctctaattgagtcat---cacttttggaaactctataaatagagttgcacgtcaccattttctagtatcacatcatattatc |
30685025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 34487220 - 34487134
Alignment:
| Q |
38 |
aactcaatgatttgactgcttttttaaatatcaattgaaaattttataacatggcaaatagcaatggatgataaagtaattttctaca |
125 |
Q |
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| T |
34487220 |
aactgaatgacttggctgcttctttaaatatcaattgcaaattttataacatgg-aaataccaatggatgataaagaacttttctaca |
34487134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 10104971 - 10105061
Alignment:
| Q |
13 |
aatatgtttattttaacatttctctaactcaatgatttgactgcttttttaaatatcaattgaaaattttataacatggcaaatagcaatg |
103 |
Q |
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| T |
10104971 |
aatatgtttattttaacattaatttaatcgaaaaatttgattgctcttttaaatatgaattgcaaattttataacatggcaaatatcaatg |
10105061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 50684362 - 50684472
Alignment:
| Q |
20 |
ttattttaacatttctctaactcaatgatttgactgcttttttaaatatcaattgaaaattttataacatggcaaatagcaatggatgataaagtaattt |
119 |
Q |
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||||||||||||||| | | | ||||||||| || |||||||||||||||||| ||||||||||||||| |||||| ||| ||| ||||||||| || |
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| T |
50684362 |
ttattttaacatttcattgagtgaatgatttggttg-ttttttaaatatcaattgcaaattttataacatgacaaatataaatagataataaagtaaatt |
50684460 |
T |
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| Q |
120 |
tctacaacggaa |
131 |
Q |
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||||||| |||| |
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| T |
50684461 |
tctacaatggaa |
50684472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 41579 - 41471
Alignment:
| Q |
13 |
aatatgtttattttaacattt-ctctaactcaatgatttgactgcttttttaaatatcaattgaaaattttataacatg-gcaaatagcaatggatgata |
110 |
Q |
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|||||||| |||||||||||| || ||| | |||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||| ||| ||||||| |
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| T |
41579 |
aatatgttcattttaacattttctttaa-tgaatgatttgactacttctttaaatatcaattgcaaattttataacatgaaaaaatataaattgatgata |
41481 |
T |
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| Q |
111 |
aagtaatttt |
120 |
Q |
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|||||||||| |
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| T |
41480 |
aagtaatttt |
41471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 48327363 - 48327430
Alignment:
| Q |
22 |
attttaacatttctctaactcaatgatttgactgcttttttaaatatcaattgaaaattttataacat |
89 |
Q |
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| T |
48327363 |
attttaacacttctttaattgaatgatttggttgcttctttaaatatcaattgcaaattttataacat |
48327430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 35337707 - 35337772
Alignment:
| Q |
60 |
tttaaatatcaattgaaaattttataacatggcaaatagcaatggatgataaagtaattttctaca |
125 |
Q |
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| T |
35337707 |
tttaaatatcaattgcaaattttataacatgacaaatattaatgagtaataaaataattttctaca |
35337772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 35167170 - 35167236
Alignment:
| Q |
60 |
tttaaatatcaattgaaaattttataacatggc-aaatagcaatggatgataaagtaattttctaca |
125 |
Q |
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| T |
35167170 |
tttaaatatccatagcaaattttataacatggcaaaatatcaatcggtgataaagtaattgtctaca |
35167236 |
T |
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