View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_high_26 (Length: 303)
Name: NF20809_high_26
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 110 - 287
Target Start/End: Complemental strand, 15756207 - 15756030
Alignment:
| Q |
110 |
gccccttcgtaaaattccatctagctccgccaatcatcaaagatgtagtataatcttctcttttccgatttcttatcagttgatactacttgctttcttc |
209 |
Q |
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| T |
15756207 |
gccccttcgtaaaattccgtctaactccgccactaatcaaagatgtagtataatcttctcgtttctgatttccgatcagttgatactacttgctttcttc |
15756108 |
T |
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| Q |
210 |
tctgtaagttttgtttcaagaacttttagagagttagaaacttcagctcttgacacatagaactttgaaacaaccaca |
287 |
Q |
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| T |
15756107 |
tctgtaagttttgtttcaagaacttttagagagttagaaacttcagctcttgacacatagaactttgaaacaaccaca |
15756030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 15756315 - 15756236
Alignment:
| Q |
1 |
tattttaatactttcaatatctatagtaactacatagataattttgtcgacaacgaaaattgtcaacctaggagtcataaa |
81 |
Q |
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| T |
15756315 |
tattttgatactttcaatatctatagtaactaca-agataattttgtcgacaacgaaaattgtcaacctaagagtcataaa |
15756236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 15756383 - 15756316
Alignment:
| Q |
1 |
tattttaatactttcaatatctatagtaactacatagataattttgtcgacaacgaaaattgtcaacct |
69 |
Q |
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| T |
15756383 |
tattttgatactttgaatatctatagtaactaca-agataattttgtcgacaacgaaaattgtcaacct |
15756316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 15766987 - 15766899
Alignment:
| Q |
199 |
ttgctttcttctctgtaagttttgtttcaagaacttttagagagttagaaacttcagctcttgacacatagaactttgaaacaaccaca |
287 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||| |
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| T |
15766987 |
ttgctttcttctctgttagttttgcttcaagaacttttagagaatttgaaatgtcagctctatgcacatagaactttgaaacaaccaca |
15766899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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