View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_high_28 (Length: 299)
Name: NF20809_high_28
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 4712695 - 4712414
Alignment:
| Q |
1 |
tatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaaccttcattatttatcttcca |
100 |
Q |
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| T |
4712695 |
tatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaaccttcattatttatcttcca |
4712596 |
T |
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| Q |
101 |
atgactttctttcatttcaaattgagattcaaatcttcttcttctaagaaaaactattactcccattataaatgctagcaagagacatgataatccaacc |
200 |
Q |
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| T |
4712595 |
atgactttctttcatttcaaattgagattcaaatcttcttcttctaagaaaaactattactcccattataaatgctagcaagagacatgataatccaacc |
4712496 |
T |
|
| Q |
201 |
aaagcaaacatgactatgggtgatttcttcgacttcgatcgtcgatttggagatgatggtataatgtgtttgatgggattca |
282 |
Q |
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| T |
4712495 |
aaagcaaacatgactatgggtgatttcttcgacttcgatcgtcgatttggagatgatggtataatgtgtttgatgggattca |
4712414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 4697819 - 4697678
Alignment:
| Q |
1 |
tatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaaccttcattatttatcttcca |
100 |
Q |
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||||||||||||||||||||||||||||||| ||| |||| |||||| | || |||||||||||||||||| |||| |||||||| || || || |||| |
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| T |
4697819 |
tatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatgggatggtaaagttgacgaaccttcttttcttgtcctcca |
4697720 |
T |
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| Q |
101 |
atgactttctttcatttcaaattgagattcaaatcttcttct |
142 |
Q |
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| T |
4697719 |
tgaactttcttccatttcaatatgagattcaagtcttcttct |
4697678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 4846650 - 4846506
Alignment:
| Q |
1 |
tatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaaccttcattatttatcttcca |
100 |
Q |
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|||||||||||||||||||||| ||||||| ||| |||| |||||| | || ||||||||||| |||||| |||| |||||||| || ||| ||||||| |
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| T |
4846650 |
tatcttcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggcacaaatgggacggtaaagttgaggaaccttctttgtttgtcttcca |
4846551 |
T |
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| Q |
101 |
atgactttctttcatttcaaattgagattcaaatcttcttcttct |
145 |
Q |
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| T |
4846550 |
tgaactttcttccatttgaagattagattcaaatcttcttcttct |
4846506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 4784464 - 4784346
Alignment:
| Q |
1 |
tatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaaccttcattatttatcttcca |
100 |
Q |
| |
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|||||||||||||||||||||| ||| |||||||| |||| |||||| | || |||||||||||||||||| |||| ||||||| || ||| ||||||| |
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| T |
4784464 |
tatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaaccttgtttctttgtcttcca |
4784365 |
T |
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| Q |
101 |
atgactttctttcatttca |
119 |
Q |
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|||||||| ||||||| |
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| T |
4784364 |
tgaactttcttccatttca |
4784346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4816893 - 4816810
Alignment:
| Q |
1 |
tatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaacctt |
84 |
Q |
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|||||||||||||||||||||| ||| |||||||| |||| |||||| | || |||||||||||||||||| |||| ||||||| |
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| T |
4816893 |
tatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaacctt |
4816810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 4846465 - 4846371
Alignment:
| Q |
171 |
aatgctagcaagagacatgataatccaaccaaagcaaacatgactatgggtgatttcttcgacttcgatcgtcgatttggagatgatggtataat |
265 |
Q |
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| T |
4846465 |
aatgccagcaagagacatgaaactccaaccacagcaaccatgaacgtggttgacttctttgactttgatcggtgttttggagatgttggtataat |
4846371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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