View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20809_high_3 (Length: 654)

Name: NF20809_high_3
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20809_high_3
NF20809_high_3
[»] chr1 (13 HSPs)
chr1 (346-639)||(38341245-38341540)
chr1 (346-568)||(38445509-38445733)
chr1 (456-550)||(38472267-38472362)
chr1 (90-188)||(10121775-10121873)
chr1 (91-145)||(34157806-34157859)
chr1 (89-175)||(36794613-36794698)
chr1 (91-156)||(45863727-45863792)
chr1 (92-167)||(9882655-9882729)
chr1 (91-142)||(38019525-38019575)
chr1 (95-176)||(5043096-5043176)
chr1 (85-118)||(26101388-26101421)
chr1 (87-163)||(30631843-30631919)
chr1 (86-154)||(39669801-39669868)
[»] chr3 (8 HSPs)
chr3 (20-194)||(20096389-20096562)
chr3 (225-324)||(20096273-20096372)
chr3 (20-83)||(20096599-20096660)
chr3 (87-120)||(25806570-25806603)
chr3 (86-173)||(29705898-29705984)
chr3 (91-173)||(25559704-25559785)
chr3 (91-169)||(37134600-37134677)
chr3 (90-142)||(47849671-47849722)
[»] chr5 (5 HSPs)
chr5 (91-171)||(6538870-6538949)
chr5 (90-173)||(36572690-36572772)
chr5 (89-147)||(29402180-29402237)
chr5 (90-171)||(38500942-38501022)
chr5 (85-142)||(41192581-41192637)
[»] chr2 (3 HSPs)
chr2 (94-173)||(45693458-45693536)
chr2 (220-257)||(14140232-14140269)
chr2 (91-144)||(38021356-38021408)
[»] chr4 (9 HSPs)
chr4 (94-193)||(24154631-24154729)
chr4 (91-142)||(53308340-53308390)
chr4 (87-173)||(45779281-45779366)
chr4 (91-147)||(13252537-13252592)
chr4 (90-142)||(41952827-41952878)
chr4 (87-173)||(9472503-9472588)
chr4 (216-264)||(18780258-18780306)
chr4 (90-118)||(37393341-37393369)
chr4 (90-118)||(54591756-54591784)
[»] chr7 (1 HSPs)
chr7 (92-173)||(44216130-44216211)
[»] chr6 (4 HSPs)
chr6 (90-173)||(11785354-11785436)
chr6 (220-262)||(30714814-30714856)
chr6 (85-133)||(9851331-9851378)
chr6 (90-154)||(34413091-34413154)
[»] chr8 (4 HSPs)
chr8 (91-173)||(20852919-20853000)
chr8 (216-262)||(44103903-44103949)
chr8 (90-118)||(33115904-33115932)
chr8 (91-175)||(43873679-43873762)
[»] scaffold0018 (1 HSPs)
scaffold0018 (90-142)||(36001-36052)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 346 - 639
Target Start/End: Complemental strand, 38341540 - 38341245
Alignment:
Q  346 ttacacctaatatttccaaaaacaaaacttcccgt--gaacattcttaccggatcacatcaacttggagtaggattgatcctcccaaactagtagctttt 443  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341540 ttacacctaatatttccaaaaacaaaacttcccgtatgaacattcttaccggatcacatcaacttggagtaggattgatcctcccaaactagtagctttt 38341441  T
Q  444 tagaccggacattttttaatttgttagaatgaagggtgtttagggcggtttatgtgttttaagggtaaatgtacaaatgtagggtatgaagttaaatttt 543  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38341440 taggccggacattttttaatttgttagaatgaagggtgtttagggcggtttatgtgttttaagggtaaatgtacaaatgtaggctatgaagttaaatttt 38341341  T
Q  544 caatttgctcatatttcatctcttccggaccagaaccatacttttgtttttgtgatggccgggtttgaaccccaaattacatatattatgcgttgt 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||| |||||    
T  38341340 caatttgctcatatttcatctcttccggaccagaaccatacttttgtttttgtgatggccgggtttgaacctcggattacatatattatgtgttgt 38341245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 346 - 568
Target Start/End: Complemental strand, 38445733 - 38445509
Alignment:
Q  346 ttacacctaatatttccaaaaacaaaacttcccgt--gaacattcttaccggatcacatcaacttggagtaggattgatcctcccaaactagtagctttt 443  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38445733 ttacacctaatatttccaaaaacaaaacttcccgtatgaacattcttaccggatcacatcaacttggagtaggattgatcctcccaaactagtagctttt 38445634  T
Q  444 tagaccggacattttttaatttgttagaatgaagggtgtttagggcggtttatgtgttttaagggtaaatgtacaaatgtagggtatgaagttaaatttt 543  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38445633 taggccggacattttttaatttgttagaatgaagggtgtttagggcggtttatgtgttttaagggtaaatgtacaaatgtaggctatgaagttaaatttt 38445534  T
Q  544 caatttgctcatatttcatctcttc 568  Q
    |||||||||||||||||||||||||    
T  38445533 caatttgctcatatttcatctcttc 38445509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 456 - 550
Target Start/End: Complemental strand, 38472362 - 38472267
Alignment:
Q  456 tttttaatttgttagaatgaagggtgtttagggcggtttatgtgttttaaggg-taaatgtacaaatgtagggtatgaagttaaattttcaatttg 550  Q
    |||| ||||||||||||| || |||||||||||  |||||| |||||| |||| |||  ||| |||||| ||||||||||||||||||||||||||    
T  38472362 ttttaaatttgttagaattaaaggtgtttagggtagtttatatgtttttaggggtaagagtataaatgtggggtatgaagttaaattttcaatttg 38472267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 10121775 - 10121873
Alignment:
Q  90 agagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattctcttttaattgtttttga 188  Q
    |||||||||||||||||| || |||||   || |||||||||||||||||||  | || || |||||||||  |||||||||||||  |||||||||||    
T  10121775 agagaaatgatatttgtacaactatttatttggtaatattttgacaactttccctctcatactcatgttatcatcttattctctttctattgtttttga 10121873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 34157806 - 34157859
Alignment:
Q  91 gagaaatgatatttgtataattattttggtgataatattttgacaactttctttt 145  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||    
T  34157806 gagaaatgatatttgtataattatttt-gtgataatttttggacaactttctttt 34157859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 36794613 - 36794698
Alignment:
Q  89 tagagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattctcttt 175  Q
    ||||||||||||||||||| |||||||||||| ||||| ||| || || ||||| |||| || |||  |||| ||||||||||||||    
T  36794613 tagagaaatgatatttgtacaattattttggt-ataatttttggataaatttctctttcatactcagattatattcttattctcttt 36794698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 45863792 - 45863727
Alignment:
Q  91 gagaaatgatatttgtataattattttggtgataatattt-tgacaactttctttttcgtattcatg 156  Q
    ||||||||||||||||| |||||||||  ||||||| ||| |||||| |||||||||||||||||||    
T  45863792 gagaaatgatatttgtacaattatttt-ttgataatttttgtgacaattttctttttcgtattcatg 45863727  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 9882729 - 9882655
Alignment:
Q  92 agaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttctta 167  Q
    |||||||||||||||| || ||||||| ||| || |||||||||||||| | | || ||||||| |||||||||||    
T  9882729 agaaatgatatttgtacaactattttg-tgacaacattttgacaactttatctctcatattcatattatgttctta 9882655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 38019575 - 38019525
Alignment:
Q  91 gagaaatgatatttgtataattattttggtgataatattttgacaactttct 142  Q
    ||||||||||||||||||||||||||| |||||||  ||| |||||||||||    
T  38019575 gagaaatgatatttgtataattatttt-gtgataacttttagacaactttct 38019525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 5043096 - 5043176
Alignment:
Q  95 aatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattctctttt 176  Q
    ||||||||||||| ||||||||| |||||||| |||  | |||||||| |||| ||||||  |||| |||||| ||||||||    
T  5043096 aatgatatttgtacaattatttt-gtgataatttttaaataactttctctttcatattcacattatattcttactctctttt 5043176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 26101388 - 26101421
Alignment:
Q  85 attttagagaaatgatatttgtataattattttg 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  26101388 attttagagaaatgatatttgtacaattattttg 26101421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 30631919 - 30631843
Alignment:
Q  87 tttagagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgtt 163  Q
    ||||||||||||||| ||||| |  |||||| |||||||  ||||||||||||||| | || || |||| |||||||    
T  30631919 tttagagaaatgatacttgtacatctatttttgtgataactttttgacaactttctctctcatactcatattatgtt 30631843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 39669801 - 39669868
Alignment:
Q  86 ttttagagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattca 154  Q
    |||||||||||||||||||||| ||  ||||| |||| ||| ||||||||||||||  |||| ||||||    
T  39669801 ttttagagaaatgatatttgtacaaccatttt-gtgacaattttttgacaactttcaatttcatattca 39669868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 1e-67; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 20096562 - 20096389
Alignment:
Q  20 tacctaagatgtgatcaattgcaacacacaagaaacacatgttttcactatcacacgcactataaattttagagaaatgatatttgtataattattttgg 119  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||      
T  20096562 tacctaagacgtgatcaattgcaacacacaagaaacacatgttttcattatcacacgcactataaattttagagaaatgatatttgtataattatttt-a 20096464  T
Q  120 tgataatattttgacaactttctttttcgtattcatgttatgttcttattctcttttaattgtttttgaccaacg 194  Q
    ||||||||||||||||||||||| | || ||||||| ||||||| |||||||||||||||||||||||| |||||    
T  20096463 tgataatattttgacaactttctctctcatattcatattatgtttttattctcttttaattgtttttgatcaacg 20096389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 20096372 - 20096273
Alignment:
Q  225 aaagttatcttaaatgattgttcaaacatcactgctctaaattataatgaataaaattatattttatttgttgtgtccattgtctactaaatcttgtaca 324  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20096372 aaagttatcttaaatggttgttcaaacatcactgctctaaattataatgaataaaattatattttgtttgttgtgtccattgtctactaaatcttgtaca 20096273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 20096660 - 20096599
Alignment:
Q  20 tacctaagatgtgatcaattgcaacacacaagaaacacatgttttcactatcacacgcactata 83  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  20096660 taccgaagatgtgatcaattgcaacaca--agaaacacatgttttcactattacacgcactata 20096599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 25806603 - 25806570
Alignment:
Q  87 tttagagaaatgatatttgtataattattttggt 120  Q
    ||||||||||||||||||||||||||||||||||    
T  25806603 tttagagaaatgatatttgtataattattttggt 25806570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 173
Target Start/End: Original strand, 29705898 - 29705984
Alignment:
Q  86 ttttagagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattctct 173  Q
    ||||||||||||||||||| || ||||||||| |||||||| |||||| || ||||| |||| || |||  ||||  |||||||||||    
T  29705898 ttttagagaaatgatatttatacaattatttt-gtgataattttttgataattttctctttcatactcacattattctcttattctct 29705984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 25559704 - 25559785
Alignment:
Q  91 gagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattctct 173  Q
    ||||||||||||||||| ||  |||||||| ||||| |||  |||||||||| | || ||||||| ||||||| |||||||||    
T  25559704 gagaaatgatatttgtacaaccattttggt-ataatttttatacaactttctctctcatattcatattatgtttttattctct 25559785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 37134677 - 37134600
Alignment:
Q  91 gagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttatt 169  Q
    ||||||||||||||||| || ||||||  ||| ||| |||| |||||||||| |||| ||||||| |||| ||||||||    
T  37134677 gagaaatgatatttgtacaactatttt-atgacaattttttaacaactttctctttcatattcatattatattcttatt 37134600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 47849671 - 47849722
Alignment:
Q  90 agagaaatgatatttgtataattattttggtgataatattttgacaactttct 142  Q
    |||||||||||||||||| ||  |||||| ||||||| |||||||||||||||    
T  47849671 agagaaatgatatttgtacaaccattttg-tgataattttttgacaactttct 47849722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 6538870 - 6538949
Alignment:
Q  91 gagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattct 171  Q
    ||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |||| ||||||  ||||||| |||||||    
T  6538870 gagaaatgatatttgtacaattattttg-tgataattttttgacaactttctctttcatattcacattatgtttttattct 6538949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 36572690 - 36572772
Alignment:
Q  90 agagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattctct 173  Q
    ||||||||||||||||||||| |||||| |||| ||  ||||||||||| ||| |||| || |||  ||||||| |||||||||    
T  36572690 agagaaatgatatttgtataactatttt-gtgacaactttttgacaactctctctttcatactcacattatgtttttattctct 36572772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 29402180 - 29402237
Alignment:
Q  89 tagagaaatgatatttgtataattattttggtgataatattttgacaactttctttttc 147  Q
    ||||||||||||||||||| ||| | |||| | ||||| ||||||||||||||||||||    
T  29402180 tagagaaatgatatttgtacaatcactttg-taataattttttgacaactttctttttc 29402237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 38500942 - 38501022
Alignment:
Q  90 agagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattct 171  Q
    |||||||||||||||||| ||  |||||| ||| ||| ||||||||||||||| |||| || |||| ||||  |||||||||    
T  38500942 agagaaatgatatttgtacaaccattttg-tgacaattttttgacaactttctctttcatactcatattatactcttattct 38501022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 41192581 - 41192637
Alignment:
Q  85 attttagagaaatgatatttgtataattattttggtgataatattttgacaactttct 142  Q
    ||||||||||||||||||||||| || ||||||| | | ||| |||||||||||||||    
T  41192581 attttagagaaatgatatttgtacaactattttgct-acaattttttgacaactttct 41192637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 45693536 - 45693458
Alignment:
Q  94 aaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattctct 173  Q
    |||||||||||||| |||||||||  ||||||| ||||||||||||| ||| || |||||| ||||| ||||||||||||    
T  45693536 aaatgatatttgtacaattatttta-tgataattttttgacaactttttttctcatattcacgttattttcttattctct 45693458  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 14140269 - 14140232
Alignment:
Q  220 tcacaaaagttatcttaaatgattgttcaaacatcact 257  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  14140269 tcacaaaagttattttaaatgattgttcaaatatcact 14140232  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 38021356 - 38021408
Alignment:
Q  91 gagaaatgatatttgtataattattttggtgataatattttgacaactttcttt 144  Q
    ||||||||||||||||| || |||||| || ||||| |||||||||||||||||    
T  38021356 gagaaatgatatttgtacaactattttagt-ataattttttgacaactttcttt 38021408  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 24154631 - 24154729
Alignment:
Q  94 aaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattctcttttaattgtttttgaccaac 193  Q
    |||| |||||| ||||| ||||||| ||||||| ||||||||||||||||| || ||||||  |  |||| ||||||||| |  ||||||||||||||||    
T  24154631 aaataatatttatataactattttg-tgataattttttgacaactttctttctcatattcacatgttgtttttattctctctccattgtttttgaccaac 24154729  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 53308340 - 53308390
Alignment:
Q  91 gagaaatgatatttgtataattattttggtgataatattttgacaactttct 142  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  53308340 gagaaatgatatttgtataattaattt-gtgataattttttgacaactttct 53308390  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 45779366 - 45779281
Alignment:
Q  87 tttagagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattctct 173  Q
    |||||||||||||||||| || || ||||||| | ||||| ||||||||||||||||| || || |||| | ||||| |||||||||    
T  45779366 tttagagaaatgatatttatacaactattttgtt-ataattttttgacaactttctttctcatactcatatgatgttattattctct 45779281  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 13252537 - 13252592
Alignment:
Q  91 gagaaatgatatttgtataattattttggtgataatattttgacaactttctttttc 147  Q
    |||||||||||||| |||||| |||||| ||||||| ||||||||||||||| ||||    
T  13252537 gagaaatgatatttatataatcattttg-tgataattttttgacaactttctatttc 13252592  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 41952827 - 41952878
Alignment:
Q  90 agagaaatgatatttgtataattattttggtgataatattttgacaactttct 142  Q
    ||||||||||||||||||||| || ||| |||||||| |||||||||||||||    
T  41952827 agagaaatgatatttgtataaatacttt-gtgataattttttgacaactttct 41952878  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 9472588 - 9472503
Alignment:
Q  87 tttagagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattctct 173  Q
    ||||||||||||||||||||| || ||||||  | ||||| ||||||||||||||| | || || |||  |||| ||||||||||||    
T  9472588 tttagagaaatgatatttgtacaactatttt-ctaataattttttgacaactttctctctcatactcacattatcttcttattctct 9472503  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 18780258 - 18780306
Alignment:
Q  216 gttatcacaaaagttatcttaaatgattgttcaaacatcactgctctaa 264  Q
    |||||||||||| || |||||| ||||| ||||||||||||| ||||||    
T  18780258 gttatcacaaaaattgtcttaattgatttttcaaacatcactactctaa 18780306  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 37393341 - 37393369
Alignment:
Q  90 agagaaatgatatttgtataattattttg 118  Q
    |||||||||||||||||||||||||||||    
T  37393341 agagaaatgatatttgtataattattttg 37393369  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 54591784 - 54591756
Alignment:
Q  90 agagaaatgatatttgtataattattttg 118  Q
    |||||||||||||||||||||||||||||    
T  54591784 agagaaatgatatttgtataattattttg 54591756  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 44216211 - 44216130
Alignment:
Q  92 agaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattctct 173  Q
    ||||||||||||||||||| |||||| |||| ||  ||||||||||| ||| |||| || |||  ||||||| |||||||||    
T  44216211 agaaatgatatttgtataactatttttgtgacaactttttgacaactctctatttcatactcacattatgtttttattctct 44216130  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 11785354 - 11785436
Alignment:
Q  90 agagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattctct 173  Q
    |||||||||||||||||| ||  |||||| ||| ||| ||||||||||||||| | || ||||||  |||| ||||||||||||    
T  11785354 agagaaatgatatttgtacaaccattttg-tgacaattttttgacaactttctatctcatattcacattatattcttattctct 11785436  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 30714814 - 30714856
Alignment:
Q  220 tcacaaaagttatcttaaatgattgttcaaacatcactgctct 262  Q
    ||||||||||||||| ||||||||||||||| |||||| ||||    
T  30714814 tcacaaaagttatctcaaatgattgttcaaatatcactactct 30714856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 9851378 - 9851331
Alignment:
Q  85 attttagagaaatgatatttgtataattattttggtgataatattttga 133  Q
    ||||||||||||||| ||||||| ||| ||||| |||||||||||||||    
T  9851378 attttagagaaatgaaatttgtacaatcatttt-gtgataatattttga 9851331  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 34413091 - 34413154
Alignment:
Q  90 agagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattca 154  Q
    |||||||||||||||||| ||| |||||| | | ||| ||||||||||||||||| || ||||||    
T  34413091 agagaaatgatatttgtacaatcattttgct-acaattttttgacaactttctttctcatattca 34413154  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 20852919 - 20853000
Alignment:
Q  91 gagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattctct 173  Q
    ||||||||||||||||| ||  |||||  ||||||| ||| ||||||||||||| || || ||| ||||| ||||||||||||    
T  20852919 gagaaatgatatttgtacaaccatttta-tgataatttttagacaactttctttctcatactcacgttatattcttattctct 20853000  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 44103903 - 44103949
Alignment:
Q  216 gttatcacaaaagttatcttaaatgattgttcaaacatcactgctct 262  Q
    |||||||||| |||||||||||||| ||||||||| |||||| ||||    
T  44103903 gttatcacaatagttatcttaaatggttgttcaaatatcactactct 44103949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 33115904 - 33115932
Alignment:
Q  90 agagaaatgatatttgtataattattttg 118  Q
    |||||||||||||||||||||||||||||    
T  33115904 agagaaatgatatttgtataattattttg 33115932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 43873762 - 43873679
Alignment:
Q  91 gagaaatgatatttgtataattattttggtgataatattttgacaactttctttttcgtattcatgttatgttcttattctcttt 175  Q
    ||||||||||||||||| ||  |||||| ||| ||| ||||||||||| ||| |||| || |||  ||||||| |||||||||||    
T  43873762 gagaaatgatatttgtacaaccattttg-tgacaattttttgacaactctctctttcatactcacattatgtttttattctcttt 43873679  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 36001 - 36052
Alignment:
Q  90 agagaaatgatatttgtataattattttggtgataatattttgacaactttct 142  Q
    |||||||||||||||||| || || |||| ||||||| |||||||||||||||    
T  36001 agagaaatgatatttgtacaactactttg-tgataattttttgacaactttct 36052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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