View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20809_high_32 (Length: 274)
Name: NF20809_high_32
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_high_32 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 38341829 - 38341560
Alignment:
| Q |
18 |
aagatcgagtatgaatattcatactgaaaagataaaacttaaattaactagctaggat-ctaactaattaattaactagattccagtttttctattggat |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||||| |||||||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
38341829 |
aagatcgagtatgaatattcatacttaaaagatcaaacttatattcactagctaggattctaactaactaattaactagagtccagtttttttattggat |
38341730 |
T |
|
| Q |
117 |
tttgtttatttgattgcaaagttgaagcatatcctt---------ctacttcaacatttgtacaa---nnnnnnnnnnnnnnnnacttcaatccatttca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |
|
|
| T |
38341729 |
tttgtttatttgattgcaaagttgaagcatatcctttataccggactacttcaacatttgtacaatttttttttatttttttttacttcaatccatttaa |
38341630 |
T |
|
| Q |
205 |
gtaatgttaaattttttaattaaatggaattcaaaatacaatatttatttgaaagaattaactagaggtg |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38341629 |
gtaatgttaaattttttaattaaatggaattcaaaatacaatatttatttgaaagaattaactagaggtg |
38341560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 38446022 - 38445753
Alignment:
| Q |
18 |
aagatcgagtatgaatattcatactgaaaagataaaacttaaattaactagctaggat-ctaactaattaattaactagattccagtttttctattggat |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||||| |||||||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
38446022 |
aagatcgagtatgaatattcatacttaaaagatcaaacttatattcactagctaggattctaactaactaattaactagagtccagtttttttattggat |
38445923 |
T |
|
| Q |
117 |
tttgtttatttgattgcaaagttgaagcatatcctt---------ctacttcaacatttgtacaa---nnnnnnnnnnnnnnnnacttcaatccatttca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |
|
|
| T |
38445922 |
tttgtttatttgattgcaaagttgaagcatatcctttataccggactacttcaacatttgtacaatttttttttatttttttttacttcaatccatttaa |
38445823 |
T |
|
| Q |
205 |
gtaatgttaaattttttaattaaatggaattcaaaatacaatatttatttgaaagaattaactagaggtg |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38445822 |
gtaatgttaaattttttaattaaatggaattcaaaatacaatatttatttgaaagaattaactagaggtg |
38445753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University