View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20809_high_35 (Length: 250)
Name: NF20809_high_35
Description: NF20809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20809_high_35 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 3952258 - 3952507
Alignment:
| Q |
1 |
cttgatacaaaatggaatggtttaagctatagcttaccgttaattgaggcgcaggaatcgcttccggcaatgtctcatgagtcttatcaagaaaagattg |
100 |
Q |
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| T |
3952258 |
cttgatacagaatggaatggtttaagctatagcttaccgttaattgaggcgcaggaatcgcttccggcaatgtctcatgagtcttatcaagaaaagattg |
3952357 |
T |
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| Q |
101 |
tttatgtttctcagtaagggcctttgaaatctcagaagcagaaagactccaggatctagacaagaactccataggctcaagaggtgttggtggctcagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3952358 |
tttatgtttctcagtaagggcctttgaaatctcagaagcagaaagactccaggatctagacaagaactccataggctcaagaggtgttggtggctcagga |
3952457 |
T |
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| Q |
201 |
atttctggcaaagacaacattaatttgtttagttcatcattttctttcat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3952458 |
atttctggcaaagacaacattaatttgtttagttcatcattttctttcat |
3952507 |
T |
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